Alligator_sinensis_CCG008952.1 (Alligator sinensis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Alligator_sinensis_CCG008952.1 T133235_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Hic1
M00141_2.00 		Mus musculus
RTGCCMNBN
NVNKGGCAY		 PBM
Badis et al.(2009)
Hic1_2816 		0.827 0.991
Hic1
M02933_2.00 		Mus musculus
RTGCCAVCYBRTGCCAVC
GBTGGCAYVRGBTGGCAY		 SELEX
Jolma et al.(2013)
Hic1_1 		0.827 0.991
Hic1
M02934_2.00 		Mus musculus
RTGCCAVCN
NGBTGGCAY		 SELEX
Jolma et al.(2013)
Hic1_2 		0.827 0.991
Hic1
M09003_2.00 		Mus musculus
KGGCAMCCH
DGGKTGCCM		 Misc
Kulakovskiy et al.(2013)
HIC1_MOUSE.H11MO.0.C 		0.827 0.991
HIC2
M02902_2.00 		Homo sapiens
RTGCCMVNN
NNBKGGCAY		 SELEX
Jolma et al.(2013)
HIC2_1 		0.795 0.852
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG008952.1 C2H2 ZF 85 107
Alligator_sinensis_CCG008952.1 C2H2 ZF 139 161
Alligator_sinensis_CCG008952.1 C2H2 ZF 167 189
Alligator_sinensis_CCG008952.1 C2H2 ZF 195 217
Alligator_sinensis_CCG008952.1 C2H2 ZF 223 245

Links

Other C2H2 ZF family TFs
Other Alligator sinensis TFs

63 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
HIC1 Cavia porcellus ENSCPOG00000020382 I 0.827
Hic1 Mus musculus ENSMUSG00000043099 D 0.827
ENSPSIG00000007902 Pelodiscus sinensis ENSPSIG00000007902 I 0.825
ENSMGAG00000005397 Meleagris gallopavo ENSMGAG00000005397 I 0.825
ENSGALG00000026718 Gallus gallus ENSGALG00000026718 I 0.825
ENSFALG00000006543 Ficedula albicollis ENSFALG00000006543 I 0.825
HIC1 Taeniopygia guttata ENSTGUG00000005835 I 0.825
Aan_R003503 Calypte anna Aan_R003503 I 0.825
Afo_R013473 Aptenodytes forsteri Afo_R013473 I 0.825
ENSLACG00000007028 Latimeria chalumnae ENSLACG00000007028 I 0.823
XP_002937184 Xenopus tropicalis XP_002937184 I 0.823
hic1 Takifugu rubripes ENSTRUG00000004590 I 0.817
hic1 Gasterosteus aculeatus ENSGACG00000010848 I 0.817
hic1 Oryzias latipes ENSORLG00000004895 I 0.814
HIC2 Oryctolagus cuniculus ENSOCUG00000010516 I 0.795
HIC2 Procavia capensis ENSPCAG00000015907 I 0.795
HIC2 Otolemur garnettii ENSOGAG00000030274 I 0.795
ENSPPYG00000012022 Pongo abelii ENSPPYG00000012022 I 0.795
Hic2 Rattus norvegicus ENSRNOG00000051458 I 0.795
ENSP00000384889 Macaca fascicularis ENSP00000384889 I 0.795
Myotis_brandtii_HIC2_10021802 Myotis brandtii Myotis_brandtii_HIC2_10021802 I 0.795
ENSSTOG00000006360 Ictidomys tridecemlineatus ENSSTOG00000006360 I 0.795
ENSSSCG00000021196 Sus scrofa ENSSSCG00000021196 I 0.795
HIC2 Pteropus vampyrus ENSPVAG00000000111 I 0.795
Hic2 Mus musculus ENSMUSG00000050240 I 0.795
HIC2 Pan troglodytes ENSPTRG00000014112 I 0.795
ENSPANG00000024301 Papio anubis ENSPANG00000024301 I 0.795
HIC2 Felis catus ENSFCAG00000023903 I 0.795
ENSCSAG00000013356 Chlorocebus sabaeus ENSCSAG00000013356 I 0.795
HIC2 Gorilla gorilla ENSGGOG00000006041 I 0.795
HIC2 Homo sapiens ENSG00000169635 D 0.795
HIC2 Canis familiaris ENSCAFG00000032493 I 0.795
HIC2 Equus caballus ENSECAG00000017997 I 0.795
HIC2 Myotis lucifugus ENSMLUG00000009669 I 0.795
HIC2 Dasypus novemcinctus ENSDNOG00000003162 I 0.795
ENSMPUG00000003198 Mustela putorius furo ENSMPUG00000003198 I 0.795
HIC2 Cavia porcellus ENSCPOG00000001134 I 0.795
Aan_R008211 Calypte anna Aan_R008211 I 0.793
Afo_R001109 Aptenodytes forsteri Afo_R001109 I 0.793
Brh_R005582 Buceros rhinoceros Brh_R005582 I 0.793
Tal_R003180 Tyto alba Tal_R003180 I 0.793
ENSAPLG00000002158 Anas platyrhynchos ENSAPLG00000002158 I 0.793
Pvit_18806 Pogona vitticeps Pvit_18806 I 0.793
Ogr08090 Ophisaurus gracilis Ogr08090 I 0.793
Cmyd_10017824 Chelonia mydas Cmyd_10017824 I 0.793
Gfo_R010813 Geospiza fortis Gfo_R010813 I 0.793
Alligator_sinensis_CCG015471.1 Alligator sinensis Alligator_sinensis_CCG015471.1 I 0.793
HIC2 Taeniopygia guttata ENSTGUG00000008699 I 0.793
ENSPSIG00000000839 Pelodiscus sinensis ENSPSIG00000000839 I 0.793
HIC2 Meleagris gallopavo ENSMGAG00000000949 I 0.793
HIC2 Microcebus murinus ENSMICG00000005154 I 0.793
ENSPSIG00000000992 Pelodiscus sinensis ENSPSIG00000000992 I 0.793
ENSLOCG00000002169 Lepisosteus oculatus ENSLOCG00000002169 I 0.793
ENSFALG00000014495 Ficedula albicollis ENSFALG00000014495 I 0.793
ENSGALG00000001403 Gallus gallus ENSGALG00000001403 I 0.793
hic2 Xenopus tropicalis XB-GENE-960044 I 0.791
ENSONIG00000014335 Oreochromis niloticus ENSONIG00000014335 I 0.789
hic1l Takifugu rubripes ENSTRUG00000013139 I 0.789
ENSPFOG00000020465 Poecilia formosa ENSPFOG00000020465 I 0.789
hic1l Gasterosteus aculeatus ENSGACG00000004268 I 0.789
ENSXMAG00000020311 Xiphophorus maculatus ENSXMAG00000020311 I 0.789
HIC2 Bos taurus ENSBTAG00000005951 I 0.781
HIC1 Anolis carolinensis ENSACAG00000011777 I 0.767