CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Alligator_sinensis_CCG009162.1
(
Alligator sinensis
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
Alligator_sinensis_CCG009162.1
T133242_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
CTCF
M02878_2.00
Homo sapiens
WGCGCCMYCTAGYGGYV
BRCCRCTAGRKGGCGCW
SELEX
Jolma et al.(2013)
CTCF_1
0.827
0.996
CTCF
M05846_2.00
Homo sapiens
NNNNHBNVCKCCCCCHD
HDGGGGGMGBNVDNNNN
SMiLE-seq
Isakova et al.(2017)
CTCF
0.827
0.996
CTCF
M08289_2.00
Homo sapiens
VGCGCCMCCTVSHGG
CCDSBAGGKGGCGCB
ChIP-seq
Schmitges et al.(2016)
P49711_3-7.RCADE
0.827
0.996
CTCF
M07550_2.00
Homo sapiens
SYGCCMYCTDSTGGH
DCCASHAGRKGGCRS
ChIP-exo
Rhee et al.(2011)
CTCF_1
0.827
0.996
CTCF
M07551_2.00
Homo sapiens
YTTTTDTTTTT
AAAAAHAAAAR
ChIP-exo
Rhee et al.(2011)
CTCF_2
0.827
0.996
CTCF
M07552_2.00
Homo sapiens
AVACAGARDTCCHYTSTGT
ACASARDGGAHYTCTGTBT
ChIP-exo
Rhee et al.(2011)
CTCF_3
0.827
0.996
CTCF
M08087_2.00
Homo sapiens
BRSYGCCMYCTRSTGGYNR
YNRCCASYAGRKGGCRSYV
ChIP-seq
Mathelier et al.(2014)
MA0139.1
0.827
0.996
CTCF
M07862_2.00
Homo sapiens
VBRSYGCCMYCTRSYGGHNVN
NBNDCCRSYAGRKGGCRSYVB
ChIP-seq
Gerstein et al.(2012)
A549_CTCF_HudsonAlpha
0.827
0.996
CTCF
M07863_2.00
Homo sapiens
BRSYGCCMYCTRSYGG
CCRSYAGRKGGCRSYV
ChIP-seq
Gerstein et al.(2012)
AG04449_CTCF_UW
0.827
0.996
CTCF
M07864_2.00
Homo sapiens
RSYGCCMYCTRSTGG
CCASYAGRKGGCRSY
ChIP-seq
Gerstein et al.(2012)
AG04450_CTCF_UW
0.827
0.996
CTCF
M07865_2.00
Homo sapiens
VBRSYGCCMYCTRSTG
CASYAGRKGGCRSYVB
ChIP-seq
Gerstein et al.(2012)
AG09309_CTCF_UW
0.827
0.996
CTCF
M07866_2.00
Homo sapiens
SYGCCMYCTRSTGGY
RCCASYAGRKGGCRS
ChIP-seq
Gerstein et al.(2012)
AG09319_CTCF_UW
0.827
0.996
CTCF
M07867_2.00
Homo sapiens
GCCMYCTDSTGGH
DCCASHAGRKGGC
ChIP-seq
Gerstein et al.(2012)
AG10803_CTCF_UW
0.827
0.996
CTCF
M07868_2.00
Homo sapiens
SYGCCMYCTRSTGGY
RCCASYAGRKGGCRS
ChIP-seq
Gerstein et al.(2012)
AoAF_CTCF_UW
0.827
0.996
CTCF
M07869_2.00
Homo sapiens
SYGCCMYCTRSYGGY
RCCRSYAGRKGGCRS
ChIP-seq
Gerstein et al.(2012)
BJ_CTCF_UW
0.827
0.996
CTCF
M07870_2.00
Homo sapiens
SYGCCMYCTRSTGGY
RCCASYAGRKGGCRS
ChIP-seq
Gerstein et al.(2012)
Caco-2_CTCF_UW
0.827
0.996
CTCF
M07871_2.00
Homo sapiens
GCCMYCTRSTGGYVR
YBRCCASYAGRKGGC
ChIP-seq
Gerstein et al.(2012)
Fibrobl_CTCF_UT-A
0.827
0.996
CTCF
M07872_2.00
Homo sapiens
RSYGCCMYCTRSTGG
CCASYAGRKGGCRSY
ChIP-seq
Gerstein et al.(2012)
Gliobla_CTCF_UT-A
0.827
0.996
CTCF
M07873_2.00
Homo sapiens
BNNBRSYGCCMYCTRSYGGYN
NRCCRSYAGRKGGCRSYVNNV
ChIP-seq
Gerstein et al.(2012)
GM06990_CTCF_UW
0.827
0.996
CTCF
M07874_2.00
Homo sapiens
RSYGCCMYCTRSYGG
CCRSYAGRKGGCRSY
ChIP-seq
Gerstein et al.(2012)
GM12864_CTCF_UW
0.827
0.996
CTCF
M07875_2.00
Homo sapiens
SYGCCMYCTRSYGGY
RCCRSYAGRKGGCRS
ChIP-seq
Gerstein et al.(2012)
GM12865_CTCF_UW
0.827
0.996
CTCF
M07876_2.00
Homo sapiens
SYGCCMYCTRSYGGY
RCCRSYAGRKGGCRS
ChIP-seq
Gerstein et al.(2012)
GM12872_CTCF_UW
0.827
0.996
CTCF
M07877_2.00
Homo sapiens
RSYGCCMYCTRSYGG
CCRSYAGRKGGCRSY
ChIP-seq
Gerstein et al.(2012)
GM12873_CTCF_UW
0.827
0.996
CTCF
M07878_2.00
Homo sapiens
SYGCCMYCTRSYGGY
RCCRSYAGRKGGCRS
ChIP-seq
Gerstein et al.(2012)
GM12874_CTCF_UW
0.827
0.996
CTCF
M07879_2.00
Homo sapiens
SYGCCMYCTRSYGGY
RCCRSYAGRKGGCRS
ChIP-seq
Gerstein et al.(2012)
GM12875_CTCF_UW
0.827
0.996
CTCF
M07880_2.00
Homo sapiens
GCCMYCTRSTGGYNR
YNRCCASYAGRKGGC
ChIP-seq
Gerstein et al.(2012)
GM12878_CTCF_Broad
0.827
0.996
CTCF
M07881_2.00
Homo sapiens
YGCCMYCTRSTGGHN
NDCCASYAGRKGGCR
ChIP-seq
Gerstein et al.(2012)
GM12878_CTCF_Stanford
0.827
0.996
CTCF
M07882_2.00
Homo sapiens
YGCCMYCTRSTG
CASYAGRKGGCR
ChIP-seq
Gerstein et al.(2012)
GM12878_CTCF_UT-A
0.827
0.996
CTCF
M07883_2.00
Homo sapiens
BRSYGCCMYCTRSTGGY
RCCASYAGRKGGCRSYV
ChIP-seq
Gerstein et al.(2012)
GM12878_CTCF_UW
0.827
0.996
CTCF
M07884_2.00
Homo sapiens
SYGCCMYCTRSTGGH
DCCASYAGRKGGCRS
ChIP-seq
Gerstein et al.(2012)
H1-hESC_CTCF_Broad
0.827
0.996
CTCF
M07885_2.00
Homo sapiens
SYGCCMYCTRSYGGH
DCCRSYAGRKGGCRS
ChIP-seq
Gerstein et al.(2012)
H1-hESC_CTCF_HudsonAlpha
0.827
0.996
CTCF
M07886_2.00
Homo sapiens
SYGCCMYCTRSTGGY
RCCASYAGRKGGCRS
ChIP-seq
Gerstein et al.(2012)
HA-sp_CTCF_UW
0.827
0.996
CTCF
M07887_2.00
Homo sapiens
RSYGCCMYCTDSTGGYNR
YNRCCASHAGRKGGCRSY
ChIP-seq
Gerstein et al.(2012)
HBMEC_CTCF_UW
0.827
0.996
CTCF
M07888_2.00
Homo sapiens
YGCCMYCTRSTGGYN
NRCCASYAGRKGGCR
ChIP-seq
Gerstein et al.(2012)
HCFaa_CTCF_UW
0.827
0.996
CTCF
M07889_2.00
Homo sapiens
YGCCMYCTDSTGGY
RCCASHAGRKGGCR
ChIP-seq
Gerstein et al.(2012)
HCPEpiC_CTCF_UW
0.827
0.996
CTCF
M07890_2.00
Homo sapiens
YGCCMYCTRSTGG
CCASYAGRKGGCR
ChIP-seq
Gerstein et al.(2012)
HEEpiC_CTCF_UW
0.827
0.996
CTCF
M07891_2.00
Homo sapiens
RSYGCCMYCTRSTGGYNR
YNRCCASYAGRKGGCRSY
ChIP-seq
Gerstein et al.(2012)
HEK293_CTCF_UW
0.827
0.996
CTCF
M07892_2.00
Homo sapiens
DSYGCCMYCTRSTGG
CCASYAGRKGGCRSH
ChIP-seq
Gerstein et al.(2012)
HeLa-S3_CTCF_Broad
0.827
0.996
CTCF
M07893_2.00
Homo sapiens
SYGCCMYCTRSTGGY
RCCASYAGRKGGCRS
ChIP-seq
Gerstein et al.(2012)
HeLa-S3_CTCF_UT-A
0.827
0.996
CTCF
M07894_2.00
Homo sapiens
VBRSYGCCMYCTRSYGG
CCRSYAGRKGGCRSYVB
ChIP-seq
Gerstein et al.(2012)
HeLa-S3_CTCF_UW
0.827
0.996
CTCF
M07895_2.00
Homo sapiens
VBRSYGCCMYCTRSTGGY
RCCASYAGRKGGCRSYVB
ChIP-seq
Gerstein et al.(2012)
HepG2_CTCF_Broad
0.827
0.996
CTCF
M07896_2.00
Homo sapiens
RSYGCCMYCTRSTGG
CCASYAGRKGGCRSY
ChIP-seq
Gerstein et al.(2012)
HepG2_CTCF_HudsonAlpha
0.827
0.996
CTCF
M07897_2.00
Homo sapiens
RSYGCCMYCTDSTGG
CCASHAGRKGGCRSY
ChIP-seq
Gerstein et al.(2012)
HepG2_CTCF_UT-A
0.827
0.996
CTCF
M07898_2.00
Homo sapiens
YGCCMYCTRSTGGY
RCCASYAGRKGGCR
ChIP-seq
Gerstein et al.(2012)
HepG2_CTCF_UW
0.827
0.996
CTCF
M07899_2.00
Homo sapiens
VBRSYGCCMYCTRSTGGYNR
YNRCCASYAGRKGGCRSYVB
ChIP-seq
Gerstein et al.(2012)
HMEC_CTCF_Broad
0.827
0.996
CTCF
M07900_2.00
Homo sapiens
VBRSYGCCMYCTRSTGG
CCASYAGRKGGCRSYVB
ChIP-seq
Gerstein et al.(2012)
HMEC_CTCF_UW
0.827
0.996
CTCF
M07901_2.00
Homo sapiens
CCMYCTRSTGG
CCASYAGRKGG
ChIP-seq
Gerstein et al.(2012)
HMF_CTCF_UW
0.827
0.996
CTCF
M07902_2.00
Homo sapiens
RSYGCCMYCTRSTGG
CCASYAGRKGGCRSY
ChIP-seq
Gerstein et al.(2012)
HPAF_CTCF_UW
0.827
0.996
CTCF
M07903_2.00
Homo sapiens
YGCCMYCTDSTGG
CCASHAGRKGGCR
ChIP-seq
Gerstein et al.(2012)
HPF_CTCF_UW
0.827
0.996
CTCF
M07904_2.00
Homo sapiens
SYGCCMYCTRSTGGY
RCCASYAGRKGGCRS
ChIP-seq
Gerstein et al.(2012)
HRE_CTCF_UW
0.827
0.996
CTCF
M07905_2.00
Homo sapiens
YGCCMYCTRSTG
CASYAGRKGGCR
ChIP-seq
Gerstein et al.(2012)
HRPEpiC_CTCF_UW
0.827
0.996
CTCF
M07906_2.00
Homo sapiens
NNBRSYGCCMYCTDSTGG
CCASHAGRKGGCRSYVNN
ChIP-seq
Gerstein et al.(2012)
HSMM_CTCF_Broad
0.827
0.996
CTCF
M07907_2.00
Homo sapiens
BRSYGCCMYCTDSTGGYN
NRCCASHAGRKGGCRSYV
ChIP-seq
Gerstein et al.(2012)
HSMMtube_CTCF_Broad
0.827
0.996
CTCF
M07908_2.00
Homo sapiens
NVBRSYGCCMYCTRSYGGYNV
BNRCCRSYAGRKGGCRSYVBN
ChIP-seq
Gerstein et al.(2012)
HUVEC_CTCF_Broad
0.827
0.996
CTCF
M07909_2.00
Homo sapiens
RSYRCCMYCTRSTGG
CCASYAGRKGGYRSY
ChIP-seq
Gerstein et al.(2012)
HUVEC_CTCF_UT-A
0.827
0.996
CTCF
M07910_2.00
Homo sapiens
BNVBRSYGCCMYCTRSYGGH
DCCRSYAGRKGGCRSYVBNV
ChIP-seq
Gerstein et al.(2012)
HUVEC_CTCF_UW
0.827
0.996
CTCF
M07911_2.00
Homo sapiens
RSYGCCMYCTRSYGGYNR
YNRCCRSYAGRKGGCRSY
ChIP-seq
Gerstein et al.(2012)
K562_CTCF_Broad
0.827
0.996
CTCF
M07912_2.00
Homo sapiens
SYGCCMYCTDSTGGY
RCCASHAGRKGGCRS
ChIP-seq
Gerstein et al.(2012)
K562_CTCF_UT-A
0.827
0.996
CTCF
M07913_2.00
Homo sapiens
SYGCCMYCTRSYGGY
RCCRSYAGRKGGCRS
ChIP-seq
Gerstein et al.(2012)
K562_CTCF_UW
0.827
0.996
CTCF
M07914_2.00
Homo sapiens
SYGCCMYCTRSTGGH
DCCASYAGRKGGCRS
ChIP-seq
Gerstein et al.(2012)
MCF-7_CTCF_UT-A
0.827
0.996
CTCF
M07915_2.00
Homo sapiens
BRSYGCCMYCTDSTGGYNRNN
NNYNRCCASHAGRKGGCRSYV
ChIP-seq
Gerstein et al.(2012)
NH-A_CTCF_Broad
0.827
0.996
CTCF
M07916_2.00
Homo sapiens
BRSYGCCMYCTDSTGGY
RCCASHAGRKGGCRSYV
ChIP-seq
Gerstein et al.(2012)
NHDF-Ad_CTCF_Broad
0.827
0.996
CTCF
M07917_2.00
Homo sapiens
SYGCCMYCTRSTGGH
DCCASYAGRKGGCRS
ChIP-seq
Gerstein et al.(2012)
NHEK_CTCF_Broad
0.827
0.996
CTCF
M07918_2.00
Homo sapiens
SYGCCMYCTRSYGG
CCRSYAGRKGGCRS
ChIP-seq
Gerstein et al.(2012)
NHEK_CTCF_UW
0.827
0.996
CTCF
M07919_2.00
Homo sapiens
RSYGCCMYCTRSTGG
CCASYAGRKGGCRSY
ChIP-seq
Gerstein et al.(2012)
NHLF_CTCF_Broad
0.827
0.996
CTCF
M07920_2.00
Homo sapiens
DSYGCCMYCTDSTGGYNR
YNRCCASHAGRKGGCRSH
ChIP-seq
Gerstein et al.(2012)
Osteobl_CTCF_Broad
0.827
0.996
CTCF
M07921_2.00
Homo sapiens
YGCCMYCTRSTGGYV
BRCCASYAGRKGGCR
ChIP-seq
Gerstein et al.(2012)
ProgFib_CTCF_UT-A
0.827
0.996
CTCF
M07922_2.00
Homo sapiens
YGCCMYCTRSYGG
CCRSYAGRKGGCR
ChIP-seq
Gerstein et al.(2012)
SAEC_CTCF_UW
0.827
0.996
CTCF
M07923_2.00
Homo sapiens
YGCCMYCTRSTGGYN
NRCCASYAGRKGGCR
ChIP-seq
Gerstein et al.(2012)
SK-N-SH_RA_UW
0.827
0.996
CTCF
M07924_2.00
Homo sapiens
RSYGCCMYCTRSTGG
CCASYAGRKGGCRSY
ChIP-seq
Gerstein et al.(2012)
T-47D_CTCF_HudsonAlpha
0.827
0.996
CTCF
M07925_2.00
Homo sapiens
RSYGCCMYCTRSTGG
CCASYAGRKGGCRSY
ChIP-seq
Gerstein et al.(2012)
WERI-Rb-1_CTCF_UW
0.827
0.996
Ctcf
M08022_2.00
Mus musculus
RSYGCCMYCTDSTGG
CCASHAGRKGGCRSY
ChIP-seq
Chen et al.(2011)
SRP000217_Ctcf
0.827
0.996
CTCF
M08869_2.00
Homo sapiens
BRSYGCCMYCTRSYGGYNR
YNRCCRSYAGRKGGCRSYV
Misc
Kulakovskiy et al.(2013)
CTCF_HUMAN.H11MO.0.A
0.827
0.996
Ctcf
M08966_2.00
Mus musculus
VBRSYGCCMYCTRSYGGYNR
YNRCCRSYAGRKGGCRSYVB
Misc
Kulakovskiy et al.(2013)
CTCF_MOUSE.H11MO.0.A
0.827
0.996
CTCF
M09503_2.00
Homo sapiens
NBRSYGCCMYCTRSTGGHHR
YDDCCASYAGRKGGCRSYVN
Misc
Heinz et al.(2010)
CD4+-CTCF_Barski_et_al._1
0.827
0.996
CTCF
M09504_2.00
Homo sapiens
TGCAGTDCCNVNNNYDRCCA
TGGYHRNNNBNGGHACTGCA
Misc
Heinz et al.(2010)
CD4+-CTCF_Barski_et_al._2
0.827
0.996
CTCF
M10152_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CTCF_01
0.827
0.996
CTCF
M10153_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CTCF_02
0.827
0.996
CTCF
M10154_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CTCF_05
0.827
0.996
CTCF
M10155_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CTCF_06
0.827
0.996
CTCF
M10156_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CTCF_07
0.827
0.996
CTCF
M10157_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CTCF_08
0.827
0.996
CTCF
M10158_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CTCF_10
0.827
0.996
CTCF
M10159_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CTCF_Q3_01
0.827
0.996
CTCF
M08238_2.00
Homo sapiens
GCGCCCYCTGSYGGY
RCCRSCAGRGGGCGC
ChIP-seq
Najafabadi et al.(2015b)
CTCF
0.827
0.996
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Alligator_sinensis_CCG009162.1
C2H2 ZF
266
288
FQCELCSYTCPRRSNLDRHMKSH
Alligator_sinensis_CCG009162.1
C2H2 ZF
294
316
HKCHLCGRAFRTVTLLRNHLNTH
Alligator_sinensis_CCG009162.1
C2H2 ZF
322
345
HKCPDCDMAFVTSGELVRHRRYKH
Alligator_sinensis_CCG009162.1
C2H2 ZF
351
373
FKCSMCDYASVEVSKLKRHIRSH
Alligator_sinensis_CCG009162.1
C2H2 ZF
379
401
FQCSLCSYASRDTYKLKRHMRTH
Alligator_sinensis_CCG009162.1
C2H2 ZF
407
430
YECYICHARFTQSGTMKMHILQKH
Alligator_sinensis_CCG009162.1
C2H2 ZF
437
460
FHCPHCDTVIARKSDLGVHLRKQH
Alligator_sinensis_CCG009162.1
C2H2 ZF
467
489
KKCRYCDAVFHERYALIQHQKSH
Alligator_sinensis_CCG009162.1
C2H2 ZF
495
517
FKCDQCDYACRQERHMIMHKRTH
Alligator_sinensis_CCG009162.1
C2H2 ZF
523
546
YACSHCDKTFRQKQLLDMHFKRYH
Alligator_sinensis_CCG009162.1
C2H2 ZF
555
575
FVCSKCGKTFTRRNTMARHSD
Links
Other
C2H2 ZF
family TFs
Other
Alligator sinensis
TFs
65 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy