Alligator_sinensis_CCG009677.1 (Alligator sinensis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Alligator_sinensis_CCG009677.1 T133250_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Zfp410
M00140_2.00
Mus musculus
CYATCCCA

TGGGATRG
PBM
Badis et al.(2009)
Zfp410_3034
0.804 0.957
ZNF410
M02882_2.00
Homo sapiens
KVNTATTATGGGATGKN

NMCATCCCATAATANBM
SELEX
Jolma et al.(2013)
ZNF410_1
0.804 0.957
ZNF410
M04435_2.00
Homo sapiens
NTATTATGGGNTRB

VYANCCCATAATAN
SELEX
Yin et al.(2017)
ZNF410_eDBD_HT-SELEX
0.804 0.957
ZNF410
M04436_2.00
Homo sapiens
NTATTATGGGHTRB

VYADCCCATAATAN
SELEX
Yin et al.(2017)
ZNF410_eDBD_Methyl-HT-SELEX
0.804 0.957
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG009677.1 C2H2 ZF 169 193
Alligator_sinensis_CCG009677.1 C2H2 ZF 199 223
Alligator_sinensis_CCG009677.1 C2H2 ZF 229 253
Alligator_sinensis_CCG009677.1 C2H2 ZF 259 283
Alligator_sinensis_CCG009677.1 C2H2 ZF 289 312

Links

Other C2H2 ZF family TFs
Other Alligator sinensis TFs

Invalid Input OrderBy

48 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action