CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Alligator_sinensis_CCG010229.1
(
Alligator sinensis
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
Alligator_sinensis_CCG010229.1
T133254_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
BCL6
M00228_2.00
Homo sapiens
NNVNDVRANN
NNTYBHNBNN
PBM
Barrera et al.(2016)
BCL6_REF
0.827
0.993
BCL6
M04424_2.00
Homo sapiens
NYGCTTTCKAGGAAHN
NDTTCCTMGAAAGCRN
SELEX
Yin et al.(2017)
BCL6_eDBD_HT-SELEX_1
0.827
0.993
BCL6
M04425_2.00
Homo sapiens
NDTTCCTMGAWWRCVN
NBGYWWTCKAGGAAHN
SELEX
Yin et al.(2017)
BCL6_eDBD_HT-SELEX_2
0.827
0.993
Bcl6
M08097_2.00
Mus musculus
NDCYYTCYAGGAAN
NTTCCTRGARRGHN
ChIP-seq
Mathelier et al.(2014)
MA0463.1
0.827
0.993
Bcl6
M08024_2.00
Mus musculus
HYNBHHWBWSHTCHYNYYYYYYNBYYHYYH
DRRDRRVNRRRRRRNRDGADSWVWDDVNRD
ChIP-seq
Chen et al.(2011)
SRP001843_Bcl6_IgG_LPSstim
0.827
0.993
BCL6
M08877_2.00
Homo sapiens
NNMYYTCYAGGAA
TTCCTRGARRKNN
Misc
Kulakovskiy et al.(2013)
BCL6_HUMAN.H11MO.0.A
0.827
0.993
Bcl6
M08972_2.00
Mus musculus
NNMTYTCYAGGAA
TTCCTRGARAKNN
Misc
Kulakovskiy et al.(2013)
BCL6_MOUSE.H11MO.0.A
0.827
0.993
Bcl6
M09513_2.00
Mus musculus
NNNNYTTCYWGGAAN
NTTCCWRGAARNNNN
Misc
Heinz et al.(2010)
Liver-Bcl6_GSE31578
0.827
0.993
BCL6
M10180_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$BCL6_01
0.827
0.993
BCL6
M10181_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$BCL6_02
0.827
0.993
BCL6
M10182_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$BCL6_Q3_01
0.827
0.993
BCL6
M10183_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$BCL6_Q3
0.827
0.993
BCL6
M10184_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$BCL6_Q6
0.827
0.993
BCL6
M04426_2.00
Homo sapiens
NTGCTTTCTAGGAAHN
NDTTCCTAGAAAGCAN
SELEX
Yin et al.(2017)
BCL6_eDBD_Methyl-HT-SELEX_1
0.827
0.993
BCL6
M04427_2.00
Homo sapiens
NDTTCCTMGAWWRCVN
NBGYWWTCKAGGAAHN
SELEX
Yin et al.(2017)
BCL6_eDBD_Methyl-HT-SELEX_2
0.827
0.993
BCL6
M00227_2.00
Homo sapiens
NTAATTRWNN
NNWYAATTAN
PBM
Barrera et al.(2016)
BCL6_H676Y
0.821
0.957
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Alligator_sinensis_CCG010229.1
C2H2 ZF
528
551
FFCNECDCRFSEEASLKRHSLQVH
Alligator_sinensis_CCG010229.1
C2H2 ZF
556
578
YKCDRCQASFRYKGNLASHKTVH
Alligator_sinensis_CCG010229.1
C2H2 ZF
584
606
YRCNICGAQFNRPANLKTHTRIH
Alligator_sinensis_CCG010229.1
C2H2 ZF
612
634
YKCETCGARFVQVAHLRAHVLIH
Alligator_sinensis_CCG010229.1
C2H2 ZF
640
662
YPCEICGTRFRHLQTLKSHLRIH
Alligator_sinensis_CCG010229.1
C2H2 ZF
668
691
YHCEKCNLHFRHKSQLRLHLRQKH
Links
Other
C2H2 ZF
family TFs
Other
Alligator sinensis
TFs
53 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy