CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
Alligator_sinensis_CCG010682.1
(
Alligator sinensis
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
Alligator_sinensis_CCG010682.1
T133262_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ZBTB48
M08391_2.00
Homo sapiens
HHDNTCCCTDR
YHAGGGANHDD
ChIP-seq
Schmitges et al.(2016)
P10074.MEME
0.812
0.961
ZBTB48
M08956_2.00
Homo sapiens
BHBRVTCCCTDR
YHAGGGABYVDV
Misc
Kulakovskiy et al.(2013)
ZBT48_HUMAN.H11MO.0.C
0.812
0.961
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Alligator_sinensis_CCG010682.1
C2H2 ZF
302
324
VECPTCHKTFLSKYYLKVHNRKH
Alligator_sinensis_CCG010682.1
C2H2 ZF
330
351
FECAKCGKCYFRKENLLEHEAR
Alligator_sinensis_CCG010682.1
C2H2 ZF
361
383
FTCSVCQEIFKRRMELRLHMVSH
Alligator_sinensis_CCG010682.1
C2H2 ZF
389
412
YKCSSCVQQFMQKKDLQSHMIKLH
Alligator_sinensis_CCG010682.1
C2H2 ZF
447
470
FVCEECGHRASSRNGLQMHIKAKH
Alligator_sinensis_CCG010682.1
C2H2 ZF
476
498
YVCEFCHHAFTQKANLNMHLRTH
Alligator_sinensis_CCG010682.1
C2H2 ZF
504
526
FQCHLCGKTFRTQASLDKHNRTH
Alligator_sinensis_CCG010682.1
C2H2 ZF
532
555
FSCEFCDQRFTEKGPLLRHVASRH
Alligator_sinensis_CCG010682.1
C2H2 ZF
561
583
HFCQICGKTFKAVEQLRVHVRRH
Alligator_sinensis_CCG010682.1
C2H2 ZF
589
611
FECTECGYKFTRQAHLRRHMEIH
Links
Other
C2H2 ZF
family TFs
Other
Alligator sinensis
TFs
39 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy