Alligator_sinensis_CCG011602.1 (Alligator sinensis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Alligator_sinensis_CCG011602.1 T133285_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PRDM16
M10223_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PRDM16_03 		0.825 0.987
PRDM16
M10224_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PRDM16_04 		0.825 0.987
PRDM16
M10225_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PRDM16_05 		0.825 0.987
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG011602.1 C2H2 ZF 167 188
Alligator_sinensis_CCG011602.1 C2H2 ZF 215 237
Alligator_sinensis_CCG011602.1 C2H2 ZF 243 265
Alligator_sinensis_CCG011602.1 C2H2 ZF 271 294
Alligator_sinensis_CCG011602.1 C2H2 ZF 300 322
Alligator_sinensis_CCG011602.1 C2H2 ZF 328 350
Alligator_sinensis_CCG011602.1 C2H2 ZF 357 378
Alligator_sinensis_CCG011602.1 C2H2 ZF 880 902
Alligator_sinensis_CCG011602.1 C2H2 ZF 908 931
Alligator_sinensis_CCG011602.1 C2H2 ZF 937 959

Links

Other C2H2 ZF family TFs
Other Alligator sinensis TFs

34 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PRDM16 Homo sapiens ENSG00000142611 D 0.825
ENSAMXG00000014024 Astyanax mexicanus ENSAMXG00000014024 I 0.777
si:ch211-263k4.2 Oryzias latipes ENSORLG00000004492 I 0.774
ENSPFOG00000010341 Poecilia formosa ENSPFOG00000010341 I 0.774
ENSPPYG00000001968 Pongo abelii ENSPPYG00000001968 I 0.825
ENSPSIG00000004093 Pelodiscus sinensis ENSPSIG00000004093 I 0.825
PRDM16 Sus scrofa ENSSSCG00000021490 I 0.815
ENSXMAG00000019072 Xiphophorus maculatus ENSXMAG00000019072 I 0.774
Aan_R005955 Calypte anna Aan_R005955 I 0.805
Afo_R003306 Aptenodytes forsteri Afo_R003306 I 0.827
Brh_R007819 Buceros rhinoceros Brh_R007819 I 0.827
ENSP00000270722 Macaca fascicularis ENSP00000270722 I 0.825
ENSP00000417899-D2 Bos grunniens ENSP00000417899-D2 I 0.823
Gfo_R009744 Geospiza fortis Gfo_R009744 I 0.827
Ogr15306 Ophisaurus gracilis Ogr15306 I 0.802
ENSONIG00000002121 Oreochromis niloticus ENSONIG00000002121 I 0.770
PRDM16 Otolemur garnettii ENSOGAG00000005055 I 0.821
PRDM16 Macaca mulatta ENSMMUG00000009350 I 0.825
ENSAPLG00000005898 Anas platyrhynchos ENSAPLG00000005898 I 0.827
PRDM16 Bos taurus ENSBTAG00000018965 I 0.823
PRDM16 Canis familiaris ENSCAFG00000019473 I 0.818
PRDM16 Danio rerio ENSDARG00000078324 I 0.779
PRDM16 Equus caballus ENSECAG00000017045 I 0.821
ENSFALG00000009580 Ficedula albicollis ENSFALG00000009580 I 0.805
si:ch211-263k4.2 Gasterosteus aculeatus ENSGACG00000006600 I 0.774
ENSGALG00000001063 Gallus gallus ENSGALG00000001063 I 0.827
PRDM16 Gorilla gorilla ENSGGOG00000003763 I 0.825
ENSGMOG00000015664 Gadus morhua ENSGMOG00000015664 I 0.779
PRDM16 Loxodonta africana ENSLAFG00000001071 I 0.823
ENSLOCG00000005336 Lepisosteus oculatus ENSLOCG00000005336 I 0.811
PRDM16 Meleagris gallopavo ENSMGAG00000001857 I 0.827
XP_002938538 Xenopus tropicalis XP_002938538 I 0.824
si:ch211-263k4.2 Takifugu rubripes ENSTRUG00000014772 N 0.756
si:ch211-263k4.2 Tetraodon nigroviridis ENSTNIG00000011975 N 0.756