Alligator_sinensis_CCG011840.1 (Alligator sinensis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Alligator_sinensis_CCG011840.1 T133288_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
DPF1
M04388_2.00
Homo sapiens
KMTATAGGBGN

NCVCCTATAKM
SELEX
Yin et al.(2017)
DPF1_eDBD_HT-SELEX
0.807 0.957
DPF1
M04389_2.00
Homo sapiens
DCVCCTATABM

KVTATAGGBGH
SELEX
Yin et al.(2017)
DPF1_eDBD_Methyl-HT-SELEX
0.807 0.957
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG011840.1 C2H2 ZF 187 210

Links

Other C2H2 ZF family TFs
Other Alligator sinensis TFs

18 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Brh_R003862 Buceros rhinoceros Brh_R003862 I 0.827
DPF3 Callithrix jacchus ENSCJAG00000014522 I 0.827
DPF1 Canis familiaris ENSCAFG00000005957 I 0.807
DPF3 Canis familiaris ENSCAFG00000016783 I 0.827
DPF1 Homo sapiens ENSG00000011332 D 0.807
DPF3 Homo sapiens ENSG00000205683 I 0.827
ENSSTOG00000011091 Ictidomys tridecemlineatus ENSSTOG00000011091 I 0.827
DPF3 Loxodonta africana ENSLAFG00000002265 I 0.827
DPF3 Meleagris gallopavo ENSMGAG00000011727 I 0.827
Dpf3 Mus musculus ENSMUSG00000021221 I 0.827
ENSNLEG00000002403 Nomascus leucogenys ENSNLEG00000002403 I 0.827
ENSOANG00000029605 Ornithorhynchus anatinus ENSOANG00000029605 I 0.827
DPF3 Oryctolagus cuniculus ENSOCUG00000016740 I 0.827
DPF3 Pan troglodytes ENSPTRG00000030704 I 0.827
ENSPSIG00000007030 Pelodiscus sinensis ENSPSIG00000007030 I 0.827
ENSPPYG00000005963 Pongo abelii ENSPPYG00000005963 I 0.827
Dpf3 Rattus norvegicus ENSRNOG00000008086 I 0.827
ENSSHAG00000014524 Sarcophilus harrisii ENSSHAG00000014524 I 0.827