Alligator_sinensis_CCG011840.1 (Alligator sinensis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Alligator_sinensis_CCG011840.1 T133288_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
DPF1
M04388_2.00
Homo sapiens
KMTATAGGBGN

NCVCCTATAKM
SELEX
Yin et al.(2017)
DPF1_eDBD_HT-SELEX
0.807 0.957
DPF1
M04389_2.00
Homo sapiens
DCVCCTATABM

KVTATAGGBGH
SELEX
Yin et al.(2017)
DPF1_eDBD_Methyl-HT-SELEX
0.807 0.957
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG011840.1 C2H2 ZF 187 210

Links

Other C2H2 ZF family TFs
Other Alligator sinensis TFs

Invalid Input OrderBy

18 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action