Alligator_sinensis_CCG012513.1 (Alligator sinensis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Alligator_sinensis_CCG012513.1 T133295_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PRDM4
M02881_2.00
Homo sapiens
TTTCAAGGCCCCC

GGGGGCCTTGAAA
SELEX
Jolma et al.(2013)
PRDM4_1
0.819 0.971
PRDM4
M04421_2.00
Homo sapiens
YRRCNGTTTCAAGKCYMCCC

GGGKRGMCTTGAAACNGYYR
SELEX
Yin et al.(2017)
PRDM4_eDBD_HT-SELEX
0.819 0.971
PRDM4
M04422_2.00
Homo sapiens
YRGCRGTTTCRAGGSTTVCC

GGBAASCCTYGAAACYGCYR
SELEX
Yin et al.(2017)
PRDM4_eDBD_Methyl-HT-SELEX_1
0.819 0.971
PRDM4
M04423_2.00
Homo sapiens
YRRCRGTTTCRAGKSYNCCC

GGGNRSMCTYGAAACYGYYR
SELEX
Yin et al.(2017)
PRDM4_eDBD_Methyl-HT-SELEX_2
0.819 0.971
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG012513.1 C2H2 ZF 593 615
Alligator_sinensis_CCG012513.1 C2H2 ZF 621 643
Alligator_sinensis_CCG012513.1 C2H2 ZF 649 671
Alligator_sinensis_CCG012513.1 C2H2 ZF 677 699
Alligator_sinensis_CCG012513.1 C2H2 ZF 705 727
Alligator_sinensis_CCG012513.1 C2H2 ZF 733 754

Links

Other C2H2 ZF family TFs
Other Alligator sinensis TFs

Invalid Input OrderBy

53 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action