CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Alligator_sinensis_CCG014455.1
(
Alligator sinensis
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
Alligator_sinensis_CCG014455.1
T133320_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
SP8
M02898_2.00
Homo sapiens
VMCACBCCCMCH
DGKGGGVGTGKB
SELEX
Jolma et al.(2013)
SP8_1
0.788
0.870
SP8
M04517_2.00
Homo sapiens
NMCMCGCCCMYH
DRKGGGCGKGKN
SELEX
Yin et al.(2017)
SP8_eDBD_HT-SELEX
0.788
0.870
SP9
M04645_2.00
Homo sapiens
VMCMCGCCCMYH
DRKGGGCGKGKB
SELEX
Yin et al.(2017)
SP9_eDBD_HT-SELEX
0.788
0.870
SP8
M04518_2.00
Homo sapiens
RHCACGCCCMYH
DRKGGGCGTGDY
SELEX
Yin et al.(2017)
SP8_eDBD_Methyl-HT-SELEX
0.788
0.870
SP9
M04646_2.00
Homo sapiens
RYCACGCCCMYH
DRKGGGCGTGRY
SELEX
Yin et al.(2017)
SP9_eDBD_Methyl-HT-SELEX
0.788
0.870
Sp1
M03682_2.00
Drosophila melanogaster
HNGCCACGCCCARK
MYTGGGCGTGGCND
SELEX
Nitta et al.(2015)
Sp1_1
0.775
0.855
Sp1
M06117_2.00
Drosophila melanogaster
DHYMCGCCCMY
RKGGGCGKRDH
B1H
Zhu et al.(2011)
Sp1_SANGER_5_FBgn0020378
0.775
0.855
Sp1
M06118_2.00
Drosophila melanogaster
NKHHMCGCCCMYNN
NNRKGGGCGKDDMN
B1H
Zhu et al.(2011)
Sp1_SOLEXA_2.5_FBgn0020378
0.775
0.855
Sp5
M09016_2.00
Mus musculus
CYCCKCCYHYHBCYYHBYYYHYHB
VDRDRRRVDRRGVDRDRGGMGGRG
Misc
Kulakovskiy et al.(2013)
SP5_MOUSE.H11MO.0.C
0.771
0.826
SP5
M10319_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SP5_Q2
0.771
0.826
Spps
M06159_2.00
Drosophila melanogaster
KWDRCCMCGCCCMBH
DVKGGGCGKGGYHWM
B1H
Zhu et al.(2011)
CG5669_SANGER_10_FBgn0039169
0.764
0.783
Spps
M06160_2.00
Drosophila melanogaster
BDDGCCMCGCCCMYN
NRKGGGCGKGGCHHV
B1H
Zhu et al.(2011)
CG5669_SOLEXA_5_FBgn0039169
0.764
0.783
Sp7
M09009_2.00
Mus musculus
VHAVCCTRTAATTW
WAATTAYAGGBTDB
Misc
Kulakovskiy et al.(2013)
SP7_MOUSE.H11MO.0.A
0.757
0.797
SP7
M10258_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$OSX_Q3
0.757
0.797
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Alligator_sinensis_CCG014455.1
C2H2 ZF
250
274
HNCHIPGCGKAYAKTSHLKAHLRWH
Alligator_sinensis_CCG014455.1
C2H2 ZF
280
304
FVCNWLFCGKRFTRSDELQRHLQTH
Alligator_sinensis_CCG014455.1
C2H2 ZF
310
332
FTCPVCSRVFMRSDHLSKHMKTH
Links
Other
C2H2 ZF
family TFs
Other
Alligator sinensis
TFs
492 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy