Alligator_sinensis_CCG014457.1 (Alligator sinensis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Alligator_sinensis_CCG014457.1 T133321_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SP2
M04525_2.00 		Homo sapiens
NYWAGYCCCGCCCMCYH
DRGKGGGCGGGRCTWRN		 SELEX
Yin et al.(2017)
SP2_eDBD_HT-SELEX 		0.807 0.971
SP2
M08326_2.00 		Homo sapiens
YCCCGCCCM
KGGGCGGGR		 ChIP-seq
Schmitges et al.(2016)
Q02086_1-3.RCADE 		0.807 0.971
SP2
M08092_2.00 		Homo sapiens
BYCCCGCCYCYBNNB
VNNVRGRGGCGGGRV		 ChIP-seq
Mathelier et al.(2014)
MA0516.1 		0.807 0.971
SP2
M07932_2.00 		Homo sapiens
KSCTAGAGMGGCBVB
VBVGCCKCTCTAGSM		 ChIP-seq
Gerstein et al.(2012)
K562_SP2_HudsonAlpha 		0.807 0.971
SP2
M08911_2.00 		Homo sapiens
SBBSNVSBCCCGCCYCYBBBBS
SVVVVRGRGGCGGGVSBNSVVS		 Misc
Kulakovskiy et al.(2013)
SP2_HUMAN.H11MO.0.A 		0.807 0.971
Sp2
M08970_2.00 		Mus musculus
SBBSNVSBCCCGCCYCYBBBBS
SVVVVRGRGGCGGGVSBNSVVS		 Misc
Kulakovskiy et al.(2013)
SP2_MOUSE.H11MO.0.B 		0.807 0.971
SP2
M10250_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SP2_01 		0.807 0.971
SP2
M10251_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SP2_04 		0.807 0.971
SP2
M10252_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SP2_06 		0.807 0.971
SP2
M10253_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SP2_Q3_01 		0.807 0.971
SP2
M10254_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SP2_Q3 		0.807 0.971
SP2
M04526_2.00 		Homo sapiens
NTWAGYCCCGCCCMCTT
AAGKGGGCGGGRCTWAN		 SELEX
Yin et al.(2017)
SP2_eDBD_Methyl-HT-SELEX 		0.807 0.971
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG014457.1 C2H2 ZF 545 569
Alligator_sinensis_CCG014457.1 C2H2 ZF 575 599
Alligator_sinensis_CCG014457.1 C2H2 ZF 605 627

Links

Other C2H2 ZF family TFs
Other Alligator sinensis TFs

55 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Ogr12593 Ophisaurus gracilis Ogr12593 I 0.827
Aan_R002402 Calypte anna Aan_R002402 I 0.827
SP2 Gallus gallus ENSGALG00000000233 I 0.827
Pvit_13958 Pogona vitticeps Pvit_13958 I 0.827
ENSLOCG00000013729 Lepisosteus oculatus ENSLOCG00000013729 I 0.823
SP2 Anolis carolinensis ENSACAG00000006793 I 0.823
ENSLACG00000006434 Latimeria chalumnae ENSLACG00000006434 I 0.823
ENSONIG00000000117 Oreochromis niloticus ENSONIG00000000117 I 0.820
ENSGMOG00000007030 Gadus morhua ENSGMOG00000007030 I 0.820
ENSPFOG00000013068 Poecilia formosa ENSPFOG00000013068 I 0.820
ENSXMAG00000014321 Xiphophorus maculatus ENSXMAG00000014321 I 0.820
sp2 Gasterosteus aculeatus ENSGACG00000019811 I 0.820
sp2 Danio rerio ENSDARG00000076763 I 0.816
sp2 Takifugu rubripes ENSTRUG00000007642 I 0.816
sp2 Oryzias latipes ENSORLG00000000102 I 0.816
sp2 Tetraodon nigroviridis ENSTNIG00000006290 I 0.816
ENSAMXG00000018374 Astyanax mexicanus ENSAMXG00000018374 I 0.812
SP2 Otolemur garnettii ENSOGAG00000030380 I 0.807
SP2 Procavia capensis ENSPCAG00000002140 I 0.807
ENSPANG00000022922 Papio anubis ENSPANG00000022922 I 0.807
SP2 Pteropus vampyrus ENSPVAG00000004255 I 0.807
ENSSTOG00000015926 Ictidomys tridecemlineatus ENSSTOG00000015926 I 0.807
ENSP00000365931 Macaca fascicularis ENSP00000365931 I 0.807
Myotis_brandtii_SP2_10030436 Myotis brandtii Myotis_brandtii_SP2_10030436 I 0.807
SP2 Sorex araneus ENSSARG00000003559 I 0.807
Sp2 Rattus norvegicus ENSRNOG00000010492 I 0.807
SP2 Pan troglodytes ENSPTRG00000009342 I 0.807
SP2 Oryctolagus cuniculus ENSOCUG00000027415 I 0.807
ENSPPYG00000008885 Pongo abelii ENSPPYG00000008885 I 0.807
Sp2 Mus musculus ENSMUSG00000018678 D 0.807
SP2 Equus caballus ENSECAG00000012859 I 0.807
SP2 Erinaceus europaeus ENSEEUG00000014248 I 0.807
ENSOARG00000007752 Ovis aries ENSOARG00000007752 I 0.807
SP2 Echinops telfairi ENSETEG00000009168 I 0.807
ENSCSAG00000002567 Chlorocebus sabaeus ENSCSAG00000002567 I 0.807
SP2 Bos taurus ENSBTAG00000013740 I 0.807
ENSCHOG00000008313 Choloepus hoffmanni ENSCHOG00000008313 I 0.807
SP2 Callithrix jacchus ENSCJAG00000007713 I 0.807
SP2 Cavia porcellus ENSCPOG00000014943 I 0.807
SP2 Felis catus ENSFCAG00000009365 I 0.807
SP2 Homo sapiens ENSG00000167182 D 0.807
ENSAMEG00000004772 Ailuropoda melanoleuca ENSAMEG00000004772 I 0.807
ENSMPUG00000015289 Mustela putorius furo ENSMPUG00000015289 I 0.807
ENSNLEG00000002058 Nomascus leucogenys ENSNLEG00000002058 I 0.807
SP2 Macaca mulatta ENSMMUG00000004765 I 0.807
SP2 Myotis lucifugus ENSMLUG00000005000 I 0.807
SP2 Gorilla gorilla ENSGGOG00000005330 I 0.807
SP2 Loxodonta africana ENSLAFG00000021817 I 0.807
ENSMICG00000014053 Microcebus murinus ENSMICG00000014053 I 0.807
SP2 Canis familiaris ENSCAFG00000016812 I 0.807
ENSSHAG00000005633 Sarcophilus harrisii ENSSHAG00000005633 I 0.803
sp2 Xenopus tropicalis XB-GENE-968274 I 0.794
SP2 Tursiops truncatus ENSTTRG00000012483 I 0.794
sp2.S Xenopus laevis XB-GENE-968279 I 0.794
SP2 Monodelphis domestica ENSMODG00000012452 I 0.777