CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Alligator_sinensis_CCG021969.1
(
Alligator sinensis
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
Alligator_sinensis_CCG021969.1
T133474_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Rest
M08983_2.00
Mus musculus
DGBHGCTGTCCDHGGTSCTGRH
DYCAGSACCDHGGACAGCDVCH
Misc
Kulakovskiy et al.(2013)
REST_MOUSE.H11MO.0.A
0.783
0.913
Rest
M10362_2.00
Rattus norvegicus
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NRSF_Q4
0.783
0.913
REST
M08084_2.00
Homo sapiens
GSHGCTGTCCRWGGTSCTGAH
DTCAGSACCWYGGACAGCDSC
ChIP-seq
Mathelier et al.(2014)
MA0138.2
0.782
0.913
REST
M07846_2.00
Homo sapiens
TCCVHGGTGCTGAM
KTCAGCACCDBGGA
ChIP-seq
Gerstein et al.(2012)
GM12878_NRSF_HudsonAlpha
0.782
0.913
REST
M07847_2.00
Homo sapiens
GCTGTCCRHGGTGCT
AGCACCDYGGACAGC
ChIP-seq
Gerstein et al.(2012)
H1-hESC_NRSF_HudsonAlpha
0.782
0.913
REST
M07848_2.00
Homo sapiens
HGCTGTCCRWGGTSCT
AGSACCWYGGACAGCD
ChIP-seq
Gerstein et al.(2012)
HeLa-S3_NRSF_HudsonAlpha
0.782
0.913
REST
M07849_2.00
Homo sapiens
TGTCCRHGGTGCTGA
TCAGCACCDYGGACA
ChIP-seq
Gerstein et al.(2012)
HepG2_NRSF_HudsonAlpha
0.782
0.913
REST
M07850_2.00
Homo sapiens
TGTCCVHGGTGCTGA
TCAGCACCDBGGACA
ChIP-seq
Gerstein et al.(2012)
HTB-11_NRSF_HudsonAlpha
0.782
0.913
REST
M07851_2.00
Homo sapiens
CTGTCCVHGGTGCTGA
TCAGCACCDBGGACAG
ChIP-seq
Gerstein et al.(2012)
K562_NRSF_HudsonAlpha
0.782
0.913
REST
M07852_2.00
Homo sapiens
GSHGCTGTCCRHGGTGCTGAM
KTCAGCACCDYGGACAGCDSC
ChIP-seq
Gerstein et al.(2012)
PANC-1_NRSF_HudsonAlpha
0.782
0.913
REST
M07853_2.00
Homo sapiens
CTGTCCRHGGTGCTG
CAGCACCDYGGACAG
ChIP-seq
Gerstein et al.(2012)
PFSK-1_NRSF_HudsonAlpha
0.782
0.913
REST
M07854_2.00
Homo sapiens
GSHGCTGTCCRHGGT
ACCDYGGACAGCDSC
ChIP-seq
Gerstein et al.(2012)
U87_NRSF_HudsonAlpha
0.782
0.913
REST
M08861_2.00
Homo sapiens
DGSHGCTGTCCRHGGTGCTGAH
DTCAGCACCDYGGACAGCDSCH
Misc
Kulakovskiy et al.(2013)
REST_HUMAN.H11MO.0.A
0.782
0.913
REST
M09501_2.00
Homo sapiens
GGHGCTGTCCRWGGTGCTGA
TCAGCACCWYGGACAGCDCC
Misc
Heinz et al.(2010)
Jurkat-NRSF
0.782
0.913
REST
M10116_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NRSE_B
0.782
0.913
REST
M10117_2.00
Homo sapiens
GSYKCTGTCCGYGGTGCTGAA
TTCAGCACCRCGGACAGMRSC
Transfac
Matys et al.(2006)
V$NRSF_01
0.782
0.913
REST
M10118_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$REST_01
0.782
0.913
REST
M10119_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$REST_04
0.782
0.913
REST
M10120_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$REST_05
0.782
0.913
REST
M10121_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$REST_06
0.782
0.913
REST
M10122_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$REST_10
0.782
0.913
REST
M10123_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$REST_12
0.782
0.913
REST
M10124_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$REST_Q5
0.782
0.913
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Alligator_sinensis_CCG021969.1
C2H2 ZF
217
239
IRCDRCGYNTNRYDHYLAHLKHH
Alligator_sinensis_CCG021969.1
C2H2 ZF
249
271
YKCTICTYTTVSEYHWKKHLRNH
Alligator_sinensis_CCG021969.1
C2H2 ZF
277
299
YTCSQCSYFSDRKNNYIQHIRTH
Alligator_sinensis_CCG021969.1
C2H2 ZF
305
327
YQCAMCPYSSSQKTHLTRHMRTH
Alligator_sinensis_CCG021969.1
C2H2 ZF
333
356
FKCDQCSYVASNQHEVTRHARQVH
Alligator_sinensis_CCG021969.1
C2H2 ZF
362
384
LTCPHCDYKTADRSNFKKHVELH
Alligator_sinensis_CCG021969.1
C2H2 ZF
390
413
FLCPVCDYAASKKCNLQYHIKSRH
Links
Other
C2H2 ZF
family TFs
Other
Alligator sinensis
TFs
57 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy