Brh_R001555 (Buceros rhinoceros)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Brh_R001555 T133503_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
CTCF
M02878_2.00
Homo sapiens
WGCGCCMYCTAGYGGYV

BRCCRCTAGRKGGCGCW
SELEX
Jolma et al.(2013)
CTCF_1
0.824 0.996
CTCF
M05846_2.00
Homo sapiens
NNNNHBNVCKCCCCCHD

HDGGGGGMGBNVDNNNN
SMiLE-seq
Isakova et al.(2017)
CTCF
0.824 0.996
CTCF
M08289_2.00
Homo sapiens
VGCGCCMCCTVSHGG

CCDSBAGGKGGCGCB
ChIP-seq
Schmitges et al.(2016)
P49711_3-7.RCADE
0.824 0.996
CTCF
M07550_2.00
Homo sapiens
SYGCCMYCTDSTGGH

DCCASHAGRKGGCRS
ChIP-exo
Rhee et al.(2011)
CTCF_1
0.824 0.996
CTCF
M07551_2.00
Homo sapiens
YTTTTDTTTTT

AAAAAHAAAAR
ChIP-exo
Rhee et al.(2011)
CTCF_2
0.824 0.996
CTCF
M07552_2.00
Homo sapiens
AVACAGARDTCCHYTSTGT

ACASARDGGAHYTCTGTBT
ChIP-exo
Rhee et al.(2011)
CTCF_3
0.824 0.996
CTCF
M08087_2.00
Homo sapiens
BRSYGCCMYCTRSTGGYNR

YNRCCASYAGRKGGCRSYV
ChIP-seq
Mathelier et al.(2014)
MA0139.1
0.824 0.996
CTCF
M07862_2.00
Homo sapiens
VBRSYGCCMYCTRSYGGHNVN

NBNDCCRSYAGRKGGCRSYVB
ChIP-seq
Gerstein et al.(2012)
A549_CTCF_HudsonAlpha
0.824 0.996
CTCF
M07863_2.00
Homo sapiens
BRSYGCCMYCTRSYGG

CCRSYAGRKGGCRSYV
ChIP-seq
Gerstein et al.(2012)
AG04449_CTCF_UW
0.824 0.996
CTCF
M07864_2.00
Homo sapiens
RSYGCCMYCTRSTGG

CCASYAGRKGGCRSY
ChIP-seq
Gerstein et al.(2012)
AG04450_CTCF_UW
0.824 0.996
CTCF
M07865_2.00
Homo sapiens
VBRSYGCCMYCTRSTG

CASYAGRKGGCRSYVB
ChIP-seq
Gerstein et al.(2012)
AG09309_CTCF_UW
0.824 0.996
CTCF
M07866_2.00
Homo sapiens
SYGCCMYCTRSTGGY

RCCASYAGRKGGCRS
ChIP-seq
Gerstein et al.(2012)
AG09319_CTCF_UW
0.824 0.996
CTCF
M07867_2.00
Homo sapiens
GCCMYCTDSTGGH

DCCASHAGRKGGC
ChIP-seq
Gerstein et al.(2012)
AG10803_CTCF_UW
0.824 0.996
CTCF
M07868_2.00
Homo sapiens
SYGCCMYCTRSTGGY

RCCASYAGRKGGCRS
ChIP-seq
Gerstein et al.(2012)
AoAF_CTCF_UW
0.824 0.996
CTCF
M07869_2.00
Homo sapiens
SYGCCMYCTRSYGGY

RCCRSYAGRKGGCRS
ChIP-seq
Gerstein et al.(2012)
BJ_CTCF_UW
0.824 0.996
CTCF
M07870_2.00
Homo sapiens
SYGCCMYCTRSTGGY

RCCASYAGRKGGCRS
ChIP-seq
Gerstein et al.(2012)
Caco-2_CTCF_UW
0.824 0.996
CTCF
M07871_2.00
Homo sapiens
GCCMYCTRSTGGYVR

YBRCCASYAGRKGGC
ChIP-seq
Gerstein et al.(2012)
Fibrobl_CTCF_UT-A
0.824 0.996
CTCF
M07872_2.00
Homo sapiens
RSYGCCMYCTRSTGG

CCASYAGRKGGCRSY
ChIP-seq
Gerstein et al.(2012)
Gliobla_CTCF_UT-A
0.824 0.996
CTCF
M07873_2.00
Homo sapiens
BNNBRSYGCCMYCTRSYGGYN

NRCCRSYAGRKGGCRSYVNNV
ChIP-seq
Gerstein et al.(2012)
GM06990_CTCF_UW
0.824 0.996
CTCF
M07874_2.00
Homo sapiens
RSYGCCMYCTRSYGG

CCRSYAGRKGGCRSY
ChIP-seq
Gerstein et al.(2012)
GM12864_CTCF_UW
0.824 0.996
CTCF
M07875_2.00
Homo sapiens
SYGCCMYCTRSYGGY

RCCRSYAGRKGGCRS
ChIP-seq
Gerstein et al.(2012)
GM12865_CTCF_UW
0.824 0.996
CTCF
M07876_2.00
Homo sapiens
SYGCCMYCTRSYGGY

RCCRSYAGRKGGCRS
ChIP-seq
Gerstein et al.(2012)
GM12872_CTCF_UW
0.824 0.996
CTCF
M07877_2.00
Homo sapiens
RSYGCCMYCTRSYGG

CCRSYAGRKGGCRSY
ChIP-seq
Gerstein et al.(2012)
GM12873_CTCF_UW
0.824 0.996
CTCF
M07878_2.00
Homo sapiens
SYGCCMYCTRSYGGY

RCCRSYAGRKGGCRS
ChIP-seq
Gerstein et al.(2012)
GM12874_CTCF_UW
0.824 0.996
CTCF
M07879_2.00
Homo sapiens
SYGCCMYCTRSYGGY

RCCRSYAGRKGGCRS
ChIP-seq
Gerstein et al.(2012)
GM12875_CTCF_UW
0.824 0.996
CTCF
M07880_2.00
Homo sapiens
GCCMYCTRSTGGYNR

YNRCCASYAGRKGGC
ChIP-seq
Gerstein et al.(2012)
GM12878_CTCF_Broad
0.824 0.996
CTCF
M07881_2.00
Homo sapiens
YGCCMYCTRSTGGHN

NDCCASYAGRKGGCR
ChIP-seq
Gerstein et al.(2012)
GM12878_CTCF_Stanford
0.824 0.996
CTCF
M07882_2.00
Homo sapiens
YGCCMYCTRSTG

CASYAGRKGGCR
ChIP-seq
Gerstein et al.(2012)
GM12878_CTCF_UT-A
0.824 0.996
CTCF
M07883_2.00
Homo sapiens
BRSYGCCMYCTRSTGGY

RCCASYAGRKGGCRSYV
ChIP-seq
Gerstein et al.(2012)
GM12878_CTCF_UW
0.824 0.996
CTCF
M07884_2.00
Homo sapiens
SYGCCMYCTRSTGGH

DCCASYAGRKGGCRS
ChIP-seq
Gerstein et al.(2012)
H1-hESC_CTCF_Broad
0.824 0.996
CTCF
M07885_2.00
Homo sapiens
SYGCCMYCTRSYGGH

DCCRSYAGRKGGCRS
ChIP-seq
Gerstein et al.(2012)
H1-hESC_CTCF_HudsonAlpha
0.824 0.996
CTCF
M07886_2.00
Homo sapiens
SYGCCMYCTRSTGGY

RCCASYAGRKGGCRS
ChIP-seq
Gerstein et al.(2012)
HA-sp_CTCF_UW
0.824 0.996
CTCF
M07887_2.00
Homo sapiens
RSYGCCMYCTDSTGGYNR

YNRCCASHAGRKGGCRSY
ChIP-seq
Gerstein et al.(2012)
HBMEC_CTCF_UW
0.824 0.996
CTCF
M07888_2.00
Homo sapiens
YGCCMYCTRSTGGYN

NRCCASYAGRKGGCR
ChIP-seq
Gerstein et al.(2012)
HCFaa_CTCF_UW
0.824 0.996
CTCF
M07889_2.00
Homo sapiens
YGCCMYCTDSTGGY

RCCASHAGRKGGCR
ChIP-seq
Gerstein et al.(2012)
HCPEpiC_CTCF_UW
0.824 0.996
CTCF
M07890_2.00
Homo sapiens
YGCCMYCTRSTGG

CCASYAGRKGGCR
ChIP-seq
Gerstein et al.(2012)
HEEpiC_CTCF_UW
0.824 0.996
CTCF
M07891_2.00
Homo sapiens
RSYGCCMYCTRSTGGYNR

YNRCCASYAGRKGGCRSY
ChIP-seq
Gerstein et al.(2012)
HEK293_CTCF_UW
0.824 0.996
CTCF
M07892_2.00
Homo sapiens
DSYGCCMYCTRSTGG

CCASYAGRKGGCRSH
ChIP-seq
Gerstein et al.(2012)
HeLa-S3_CTCF_Broad
0.824 0.996
CTCF
M07893_2.00
Homo sapiens
SYGCCMYCTRSTGGY

RCCASYAGRKGGCRS
ChIP-seq
Gerstein et al.(2012)
HeLa-S3_CTCF_UT-A
0.824 0.996
CTCF
M07894_2.00
Homo sapiens
VBRSYGCCMYCTRSYGG

CCRSYAGRKGGCRSYVB
ChIP-seq
Gerstein et al.(2012)
HeLa-S3_CTCF_UW
0.824 0.996
CTCF
M07895_2.00
Homo sapiens
VBRSYGCCMYCTRSTGGY

RCCASYAGRKGGCRSYVB
ChIP-seq
Gerstein et al.(2012)
HepG2_CTCF_Broad
0.824 0.996
CTCF
M07896_2.00
Homo sapiens
RSYGCCMYCTRSTGG

CCASYAGRKGGCRSY
ChIP-seq
Gerstein et al.(2012)
HepG2_CTCF_HudsonAlpha
0.824 0.996
CTCF
M07897_2.00
Homo sapiens
RSYGCCMYCTDSTGG

CCASHAGRKGGCRSY
ChIP-seq
Gerstein et al.(2012)
HepG2_CTCF_UT-A
0.824 0.996
CTCF
M07898_2.00
Homo sapiens
YGCCMYCTRSTGGY

RCCASYAGRKGGCR
ChIP-seq
Gerstein et al.(2012)
HepG2_CTCF_UW
0.824 0.996
CTCF
M07899_2.00
Homo sapiens
VBRSYGCCMYCTRSTGGYNR

YNRCCASYAGRKGGCRSYVB
ChIP-seq
Gerstein et al.(2012)
HMEC_CTCF_Broad
0.824 0.996
CTCF
M07900_2.00
Homo sapiens
VBRSYGCCMYCTRSTGG

CCASYAGRKGGCRSYVB
ChIP-seq
Gerstein et al.(2012)
HMEC_CTCF_UW
0.824 0.996
CTCF
M07901_2.00
Homo sapiens
CCMYCTRSTGG

CCASYAGRKGG
ChIP-seq
Gerstein et al.(2012)
HMF_CTCF_UW
0.824 0.996
CTCF
M07902_2.00
Homo sapiens
RSYGCCMYCTRSTGG

CCASYAGRKGGCRSY
ChIP-seq
Gerstein et al.(2012)
HPAF_CTCF_UW
0.824 0.996
CTCF
M07903_2.00
Homo sapiens
YGCCMYCTDSTGG

CCASHAGRKGGCR
ChIP-seq
Gerstein et al.(2012)
HPF_CTCF_UW
0.824 0.996
CTCF
M07904_2.00
Homo sapiens
SYGCCMYCTRSTGGY

RCCASYAGRKGGCRS
ChIP-seq
Gerstein et al.(2012)
HRE_CTCF_UW
0.824 0.996
CTCF
M07905_2.00
Homo sapiens
YGCCMYCTRSTG

CASYAGRKGGCR
ChIP-seq
Gerstein et al.(2012)
HRPEpiC_CTCF_UW
0.824 0.996
CTCF
M07906_2.00
Homo sapiens
NNBRSYGCCMYCTDSTGG

CCASHAGRKGGCRSYVNN
ChIP-seq
Gerstein et al.(2012)
HSMM_CTCF_Broad
0.824 0.996
CTCF
M07907_2.00
Homo sapiens
BRSYGCCMYCTDSTGGYN

NRCCASHAGRKGGCRSYV
ChIP-seq
Gerstein et al.(2012)
HSMMtube_CTCF_Broad
0.824 0.996
CTCF
M07908_2.00
Homo sapiens
NVBRSYGCCMYCTRSYGGYNV

BNRCCRSYAGRKGGCRSYVBN
ChIP-seq
Gerstein et al.(2012)
HUVEC_CTCF_Broad
0.824 0.996
CTCF
M07909_2.00
Homo sapiens
RSYRCCMYCTRSTGG

CCASYAGRKGGYRSY
ChIP-seq
Gerstein et al.(2012)
HUVEC_CTCF_UT-A
0.824 0.996
CTCF
M07910_2.00
Homo sapiens
BNVBRSYGCCMYCTRSYGGH

DCCRSYAGRKGGCRSYVBNV
ChIP-seq
Gerstein et al.(2012)
HUVEC_CTCF_UW
0.824 0.996
CTCF
M07911_2.00
Homo sapiens
RSYGCCMYCTRSYGGYNR

YNRCCRSYAGRKGGCRSY
ChIP-seq
Gerstein et al.(2012)
K562_CTCF_Broad
0.824 0.996
CTCF
M07912_2.00
Homo sapiens
SYGCCMYCTDSTGGY

RCCASHAGRKGGCRS
ChIP-seq
Gerstein et al.(2012)
K562_CTCF_UT-A
0.824 0.996
CTCF
M07913_2.00
Homo sapiens
SYGCCMYCTRSYGGY

RCCRSYAGRKGGCRS
ChIP-seq
Gerstein et al.(2012)
K562_CTCF_UW
0.824 0.996
CTCF
M07914_2.00
Homo sapiens
SYGCCMYCTRSTGGH

DCCASYAGRKGGCRS
ChIP-seq
Gerstein et al.(2012)
MCF-7_CTCF_UT-A
0.824 0.996
CTCF
M07915_2.00
Homo sapiens
BRSYGCCMYCTDSTGGYNRNN

NNYNRCCASHAGRKGGCRSYV
ChIP-seq
Gerstein et al.(2012)
NH-A_CTCF_Broad
0.824 0.996
CTCF
M07916_2.00
Homo sapiens
BRSYGCCMYCTDSTGGY

RCCASHAGRKGGCRSYV
ChIP-seq
Gerstein et al.(2012)
NHDF-Ad_CTCF_Broad
0.824 0.996
CTCF
M07917_2.00
Homo sapiens
SYGCCMYCTRSTGGH

DCCASYAGRKGGCRS
ChIP-seq
Gerstein et al.(2012)
NHEK_CTCF_Broad
0.824 0.996
CTCF
M07918_2.00
Homo sapiens
SYGCCMYCTRSYGG

CCRSYAGRKGGCRS
ChIP-seq
Gerstein et al.(2012)
NHEK_CTCF_UW
0.824 0.996
CTCF
M07919_2.00
Homo sapiens
RSYGCCMYCTRSTGG

CCASYAGRKGGCRSY
ChIP-seq
Gerstein et al.(2012)
NHLF_CTCF_Broad
0.824 0.996
CTCF
M07920_2.00
Homo sapiens
DSYGCCMYCTDSTGGYNR

YNRCCASHAGRKGGCRSH
ChIP-seq
Gerstein et al.(2012)
Osteobl_CTCF_Broad
0.824 0.996
CTCF
M07921_2.00
Homo sapiens
YGCCMYCTRSTGGYV

BRCCASYAGRKGGCR
ChIP-seq
Gerstein et al.(2012)
ProgFib_CTCF_UT-A
0.824 0.996
CTCF
M07922_2.00
Homo sapiens
YGCCMYCTRSYGG

CCRSYAGRKGGCR
ChIP-seq
Gerstein et al.(2012)
SAEC_CTCF_UW
0.824 0.996
CTCF
M07923_2.00
Homo sapiens
YGCCMYCTRSTGGYN

NRCCASYAGRKGGCR
ChIP-seq
Gerstein et al.(2012)
SK-N-SH_RA_UW
0.824 0.996
CTCF
M07924_2.00
Homo sapiens
RSYGCCMYCTRSTGG

CCASYAGRKGGCRSY
ChIP-seq
Gerstein et al.(2012)
T-47D_CTCF_HudsonAlpha
0.824 0.996
CTCF
M07925_2.00
Homo sapiens
RSYGCCMYCTRSTGG

CCASYAGRKGGCRSY
ChIP-seq
Gerstein et al.(2012)
WERI-Rb-1_CTCF_UW
0.824 0.996
Ctcf
M08022_2.00
Mus musculus
RSYGCCMYCTDSTGG

CCASHAGRKGGCRSY
ChIP-seq
Chen et al.(2011)
SRP000217_Ctcf
0.824 0.996
CTCF
M08869_2.00
Homo sapiens
BRSYGCCMYCTRSYGGYNR

YNRCCRSYAGRKGGCRSYV
Misc
Kulakovskiy et al.(2013)
CTCF_HUMAN.H11MO.0.A
0.824 0.996
Ctcf
M08966_2.00
Mus musculus
VBRSYGCCMYCTRSYGGYNR

YNRCCRSYAGRKGGCRSYVB
Misc
Kulakovskiy et al.(2013)
CTCF_MOUSE.H11MO.0.A
0.824 0.996
CTCF
M09503_2.00
Homo sapiens
NBRSYGCCMYCTRSTGGHHR

YDDCCASYAGRKGGCRSYVN
Misc
Heinz et al.(2010)
CD4+-CTCF_Barski_et_al._1
0.824 0.996
CTCF
M09504_2.00
Homo sapiens
TGCAGTDCCNVNNNYDRCCA

TGGYHRNNNBNGGHACTGCA
Misc
Heinz et al.(2010)
CD4+-CTCF_Barski_et_al._2
0.824 0.996
CTCF
M10152_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CTCF_01
0.824 0.996
CTCF
M10153_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CTCF_02
0.824 0.996
CTCF
M10154_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CTCF_05
0.824 0.996
CTCF
M10155_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CTCF_06
0.824 0.996
CTCF
M10156_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CTCF_07
0.824 0.996
CTCF
M10157_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CTCF_08
0.824 0.996
CTCF
M10158_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CTCF_10
0.824 0.996
CTCF
M10159_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CTCF_Q3_01
0.824 0.996
CTCF
M08238_2.00
Homo sapiens
GCGCCCYCTGSYGGY

RCCRSCAGRGGGCGC
ChIP-seq
Najafabadi et al.(2015b)
CTCF
0.824 0.996
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Brh_R001555 C2H2 ZF 247 269
Brh_R001555 C2H2 ZF 275 297
Brh_R001555 C2H2 ZF 303 326
Brh_R001555 C2H2 ZF 332 354
Brh_R001555 C2H2 ZF 360 382
Brh_R001555 C2H2 ZF 388 411
Brh_R001555 C2H2 ZF 418 441
Brh_R001555 C2H2 ZF 448 470
Brh_R001555 C2H2 ZF 476 498
Brh_R001555 C2H2 ZF 504 527
Brh_R001555 C2H2 ZF 536 556

Links

Other C2H2 ZF family TFs
Other Buceros rhinoceros TFs

Invalid Input OrderBy

65 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action