CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Ca_12901
(
Cicer arietinum
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
Ca_12901
T133708_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
RBE
M01858_2.00
Arabidopsis thaliana
NNNASWN
NWSTNNN
PBM
Weirauch et al.(2014)
pTH7538
0.777
0.870
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Ca_12901
C2H2 ZF
56
78
YTCSFCRKEFKSAQALGGHMNVH
Links
Other
C2H2 ZF
family TFs
Other
Cicer arietinum
TFs
144 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
GLYMA13G34450
Glycine max
GLYMA13G34450
I
0.827
GLYMA12G35930
Glycine max
GLYMA12G35930
I
0.827
Bostr.25993s0539
Boechera stricta
Bostr.25993s0539
I
0.825
Solyc09g089590.1
Solanum lycopersicum
Solyc09g089590.1
I
0.825
OBART11G23770
Oryza barthii
OBART11G23770
I
0.825
Bostr.19424s0332
Boechera stricta
Bostr.19424s0332
I
0.825
Thhalv10017870m.g
Eutrema salsugineum
Thhalv10017870m.g
I
0.825
Cagra.2636s0028
Capsella grandiflora
Cagra.2636s0028
I
0.825
Cagra.3462s0001
Capsella grandiflora
Cagra.3462s0001
I
0.825
Carubv10016073m.g
Capsella rubella
Carubv10016073m.g
I
0.825
POPTR_0010s08530
Populus trichocarpa
POPTR_0010s08530
I
0.825
Ciclev10006961m.g
Citrus clementina
Ciclev10006961m.g
I
0.825
OGLUM11G22950
Oryza glumaepatula
OGLUM11G22950
I
0.825
Carubv10024766m.g
Capsella rubella
Carubv10024766m.g
I
0.825
OLONG_005038
Oryza longistaminata
OLONG_005038
I
0.825
OS11G0707300
Oryza sativa
OS11G0707300
I
0.825
29603.m000536
Ricinus communis
29603.m000536
I
0.825
Pm009420
Prunus mume
Pm009420
I
0.825
VIT_05s0049g00070
Vitis vinifera
VIT_05s0049g00070
I
0.825
VIT_05s0049g00080
Vitis vinifera
VIT_05s0049g00080
I
0.825
ONIVA11G23290
Oryza nivara
ONIVA11G23290
I
0.825
cassava3359.m1
Manihot esculenta
cassava3359.m1
I
0.825
PGSC0003DMG400040225
Solanum tuberosum
PGSC0003DMG400040225
I
0.825
POPTR_0002s04260
Populus trichocarpa
POPTR_0002s04260
I
0.825
PGSC0003DMG400017271
Solanum tuberosum
PGSC0003DMG400017271
I
0.825
OMERI07G13080
Oryza meridionalis
OMERI07G13080
I
0.825
cassava40050.m1
Manihot esculenta
cassava40050.m1
I
0.825
evm.TU.supercontig_44.99
Carica papaya
evm.TU.supercontig_44.99
I
0.825
gene08240-v1.0-hybrid
Fragaria vesca
gene08240-v1.0-hybrid
I
0.825
Bo1g102390
Brassica oleracea
Bo1g102390
I
0.825
scaffold_403098.1
Arabidopsis lyrata
scaffold_403098.1
I
0.825
Bo3g003640
Brassica oleracea
Bo3g003640
I
0.825
SapurV1A.0292s0200
Salix purpurea
SapurV1A.0292s0200
I
0.825
Bra005874
Brassica rapa
Bra005874
I
0.825
BGIOSGA033510
Oryza indica
BGIOSGA033510
I
0.825
Al_scaffold_0409_3
Arabidopsis lyrata
Al_scaffold_0409_3
I
0.825
SUP
Arabidopsis thaliana
AT3G23130
I
0.825
ZFP11
Arabidopsis thaliana
AT2G42410
I
0.825
Solyc06g053720.1
Solanum lycopersicum
Solyc06g053720.1
I
0.825
SapurV1A.0006s1030
Salix purpurea
SapurV1A.0006s1030
I
0.825
Si024070m.g
Setaria italica
Si024070m.g
I
0.825
orange1.1g041626m.g
Citrus sinensis
orange1.1g041626m.g
I
0.825
SapurV1A.0007s0790
Salix purpurea
SapurV1A.0007s0790
I
0.825
Gorai.005G047800
Gossypium raimondii
Gorai.005G047800
I
0.825
PRUPE_ppa015007mg
Prunus persica
PRUPE_ppa015007mg
I
0.825
TRIUR3_03721
Triticum urartu
TRIUR3_03721
I
0.825
PDK_20s1313421g001
Phoenix dactylifera
PDK_20s1313421g001
I
0.825
Gorai.006G247700
Gossypium raimondii
Gorai.006G247700
I
0.825
SUP
Arabidopsis lyrata
fgenesh2_kg.3__2524__AT3G23130.1
I
0.825
PDK_20s1360411g001
Phoenix dactylifera
PDK_20s1360411g001
I
0.825
Bra023759
Brassica rapa
Bra023759
I
0.825
MDP0000225209
Malus domestica
MDP0000225209
I
0.825
Thhalv10021992m.g
Eutrema salsugineum
Thhalv10021992m.g
I
0.825
ORUFI11G25670
Oryza rufipogon
ORUFI11G25670
I
0.825
POPTR_0008s16390
Populus trichocarpa
POPTR_0008s16390
I
0.815
Bostr.30275s0246
Boechera stricta
Bostr.30275s0246
I
0.815
Cagra.3356s0074
Capsella grandiflora
Cagra.3356s0074
I
0.815
Carubv10006881m.g
Capsella rubella
Carubv10006881m.g
I
0.815
Bo1g017920
Brassica oleracea
Bo1g017920
I
0.815
Bra013257
Brassica rapa
Bra013257
I
0.815
Cucsa.255130
Cucumis sativus
Cucsa.255130
I
0.815
Cla021878
Citrullus lanatus
Cla021878
I
0.815
AT4G17810
Arabidopsis thaliana
AT4G17810
I
0.815
Lus10022206.g
Linum usitatissimum
Lus10022206.g
I
0.815
GRMZM2G000126
Zea mays
GRMZM2G000126
I
0.815
Si011797m.g
Setaria italica
Si011797m.g
I
0.813
TCM_021876
Theobroma cacao
TCM_021876
N
0.805
Gorai.002G256500
Gossypium raimondii
Gorai.002G256500
N
0.805
28345.m000111
Ricinus communis
28345.m000111
N
0.805
cassava4410.m1
Manihot esculenta
cassava4410.m1
N
0.805
Cucsa.313240
Cucumis sativus
Cucsa.313240
I
0.803
Pavir.J31403
Panicum virgatum
Pavir.J31403
I
0.803
Pavir.Gb02516
Panicum virgatum
Pavir.Gb02516
I
0.803
Cla016442
Citrullus lanatus
Cla016442
I
0.803
Sb06g001730
Sorghum bicolor
Sb06g001730
I
0.803
OBART04G02370
Oryza barthii
OBART04G02370
I
0.803
F775_21953
Aegilops tauschii
F775_21953
I
0.803
OLONG_022667
Oryza longistaminata
OLONG_022667
I
0.803
GRMZM2G137736
Zea mays
GRMZM2G137736
I
0.803
ONIVA04G01910
Oryza nivara
ONIVA04G01910
I
0.803
LPERR04G01660
Leersia perrieri
LPERR04G01660
I
0.803
OMERI04G02610
Oryza meridionalis
OMERI04G02610
I
0.803
OB04G12040
Oryza brachyantha
OB04G12040
I
0.803
ORUFI04G03150
Oryza rufipogon
ORUFI04G03150
I
0.803
POPTR_0016s10480
Populus trichocarpa
POPTR_0016s10480
I
0.803
BGIOSGA015610
Oryza indica
BGIOSGA015610
I
0.803
OS04G0168100
Oryza sativa
OS04G0168100
I
0.803
OGLUM04G02100
Oryza glumaepatula
OGLUM04G02100
I
0.803
Pm002649
Prunus mume
Pm002649
N
0.792
mg013419m
Mimulus guttatus
mg013419m
I
0.779
LPERR05G08090
Leersia perrieri
LPERR05G08090
I
0.777
Cagra.2117s0055
Capsella grandiflora
Cagra.2117s0055
I
0.777
MLOC_76482
Hordeum vulgare
MLOC_76482
I
0.777
MTR_1g070265
Medicago truncatula
MTR_1g070265
I
0.777
Carubv10002935m.g
Capsella rubella
Carubv10002935m.g
I
0.777
OB05G18710
Oryza brachyantha
OB05G18710
I
0.777
RBE
Arabidopsis lyrata
fgenesh2_kg.6__542__AT5G06070.1
I
0.777
Bo9g176590
Brassica oleracea
Bo9g176590
I
0.777
BGIOSGA018378
Oryza indica
BGIOSGA018378
I
0.777
RBE
Arabidopsis thaliana
AT5G06070
D
0.777
Pavir.Ab00024
Panicum virgatum
Pavir.Ab00024
I
0.777
Pavir.Aa03593
Panicum virgatum
Pavir.Aa03593
I
0.777
Gorai.008G226800
Gossypium raimondii
Gorai.008G226800
I
0.777
Gorai.012G106300
Gossypium raimondii
Gorai.012G106300
I
0.777
Bra009160
Brassica rapa
Bra009160
I
0.777
GSMUA_Achr7G26850_001
Musa acuminata
GSMUA_Achr7G26850_001
I
0.777
Bostr.13129s0367
Boechera stricta
Bostr.13129s0367
I
0.777
OBART05G10090
Oryza barthii
OBART05G10090
I
0.777
TRIUR3_04794
Triticum urartu
TRIUR3_04794
I
0.777
ONIVA06G26970
Oryza nivara
ONIVA06G26970
I
0.777
cassava14614.m1
Manihot esculenta
cassava14614.m1
I
0.777
OPUNC05G08760
Oryza punctata
OPUNC05G08760
I
0.777
ORUFI05G10920
Oryza rufipogon
ORUFI05G10920
I
0.777
ORGLA05G0088100
Oryza glaberrima
ORGLA05G0088100
I
0.777
OS05G0286100
Oryza sativa
OS05G0286100
I
0.777
Traes_1BL_4026DC5011
Triticum aestivum
Traes_1BL_4026DC5011
I
0.777
OLONG_023754
Oryza longistaminata
OLONG_023754
I
0.777
SapurV1A.0378s0150
Salix purpurea
SapurV1A.0378s0150
I
0.777
TCM_021875
Theobroma cacao
TCM_021875
I
0.777
Thhalv10015420m.g
Eutrema salsugineum
Thhalv10015420m.g
I
0.777
Si019050m.g
Setaria italica
Si019050m.g
I
0.777
Traes_1AL_80D0BD0DC
Triticum aestivum
Traes_1AL_80D0BD0DC
I
0.777
OGLUM05G10360
Oryza glumaepatula
OGLUM05G10360
I
0.777
e_gw1.1.457.1
Physcomitrella patens
e_gw1.1.457.1
I
0.774
e_gw1.6.268.1
Physcomitrella patens
e_gw1.6.268.1
I
0.774
F775_00917
Aegilops tauschii
F775_00917
I
0.774
Lus10000705.g
Linum usitatissimum
Lus10000705.g
I
0.769
Lus10024875.g
Linum usitatissimum
Lus10024875.g
I
0.769
Cla008944
Citrullus lanatus
Cla008944
I
0.767
GLYMA11G34285
Glycine max
GLYMA11G34285
I
0.767
LjSGA_038753.2
Lotus japonicus
LjSGA_038753.2
I
0.767
OB02G10110
Oryza brachyantha
OB02G10110
I
0.767
Cucsa.321760
Cucumis sativus
Cucsa.321760
I
0.767
cassava22028.m1
Manihot esculenta
cassava22028.m1
I
0.767
OPUNC11G05640
Oryza punctata
OPUNC11G05640
I
0.767
Si019563m.g
Setaria italica
Si019563m.g
I
0.764
OB02G44430
Oryza brachyantha
OB02G44430
I
0.764
GRMZM2G344974
Zea mays
GRMZM2G344974
I
0.764
BRADI3G55760
Brachypodium distachyon
BRADI3G55760
I
0.764
Sb04g037590
Sorghum bicolor
Sb04g037590
I
0.764
e_gw1.14.264.1
Physcomitrella patens
e_gw1.14.264.1
I
0.764
Pavir.Ab03315
Panicum virgatum
Pavir.Ab03315
I
0.764
e_gw1.186.49.1
Physcomitrella patens
e_gw1.186.49.1
I
0.764
Aquca_003_00162
Aquilegia coerulea
Aquca_003_00162
N
0.757