CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Cflo_04377--XP_391847.3_APIME
(
Camponotus floridanus
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
Cflo_04377--XP_391847.3_APIME
T133786_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Blimp-1
M03692_2.00
Drosophila melanogaster
NNYACTTTCVYYN
NRRBGAAAGTRNN
SELEX
Nitta et al.(2015)
Blimp-1_1
0.815
0.974
Blimp-1
M06141_2.00
Drosophila melanogaster
ACTTTCACTTTY
RAAAGTGAAAGT
B1H
Zhu et al.(2011)
Blimp-1_NAR_FBgn0035625
0.815
0.974
Blimp-1
M06142_2.00
Drosophila melanogaster
RCTTTCMCTTTY
RAAAGKGAAAGY
B1H
Zhu et al.(2011)
Blimp-1_SANGER_5_FBgn0035625
0.815
0.974
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cflo_04377--XP_391847.3_APIME
C2H2 ZF
766
788
YECNVCCKTFGQLSNLKVHLRTH
Cflo_04377--XP_391847.3_APIME
C2H2 ZF
794
816
FKCNVCTKSFTQLAHLQKHHLVH
Cflo_04377--XP_391847.3_APIME
C2H2 ZF
822
844
HQCEICKKRFSSTSNLKTHLRLH
Cflo_04377--XP_391847.3_APIME
C2H2 ZF
850
872
YACDLCPAKFTQFVHLKLHKRLH
Cflo_04377--XP_391847.3_APIME
C2H2 ZF
878
899
YTCQGCDKKYISASGLRTHWKT
Links
Other
C2H2 ZF
family TFs
Other
Camponotus floridanus
TFs
76 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy