CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Cflo_07707--XP_393944.1_APIME
(
Camponotus floridanus
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
Cflo_07707--XP_393944.1_APIME
T133824_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
wor
M03664_2.00
Drosophila melanogaster
GYRACAGGTGYAH
DTRCACCTGTYRC
SELEX
Nitta et al.(2015)
wor_1
0.779
0.842
wor
M03665_2.00
Drosophila melanogaster
DTRCACCTGTYGY
RCRACAGGTGYAH
SELEX
Nitta et al.(2015)
wor_2
0.779
0.842
wor
M06051_2.00
Drosophila melanogaster
CACCTGY
RCAGGTG
B1H
Zhu et al.(2011)
wor_SANGER_2.5_FBgn0001983
0.779
0.842
wor
M06052_2.00
Drosophila melanogaster
VCACCTGY
RCAGGTGB
B1H
Zhu et al.(2011)
wor_SOLEXA_2.5_FBgn0001983
0.779
0.842
esg
M06050_2.00
Drosophila melanogaster
CACCTGH
DCAGGTG
B1H
Zhu et al.(2011)
esg_SANGER_2.5_FBgn0001981
0.771
0.860
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cflo_07707--XP_393944.1_APIME
C2H2 ZF
312
334
YSCADCTKSYSTYSGLSKHQQFH
Cflo_07707--XP_393944.1_APIME
C2H2 ZF
346
368
FSCKYCQKVYVSLGALKMHIRTH
Cflo_07707--XP_393944.1_APIME
C2H2 ZF
372
394
CKCQTCGKAFSRPWLLQGHIRTH
Cflo_07707--XP_393944.1_APIME
C2H2 ZF
400
422
FRCQHCNRAFADRSNLRAHLQTH
Cflo_07707--XP_393944.1_APIME
C2H2 ZF
428
449
YSCDRCSKTFSRMSLLTKHQEG
Links
Other
C2H2 ZF
family TFs
Other
Camponotus floridanus
TFs
48 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy