Cmyd_10003405 (Chelonia mydas)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Cmyd_10003405 T134218_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RREB1
M02665_2.00 		Homo sapiens
MCMCMAMMCAMCMMCHMMSV
BSKKDGKKGKTGKKTKGKGK		 SELEX
Mathelier et al.(2014)
MA0073.1 		0.803 0.945
RREB1
M10203_2.00 		Homo sapiens
MCCCAAMCMMMCMM
KKGKKKGKTTGGGK		 Transfac
Matys et al.(2006)
V$RREB1_01 		0.803 0.945
RREB1
M10204_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RREB1_Q5 		0.803 0.945
RREB1
M10205_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RREB_Q5 		0.803 0.945
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cmyd_10003405 C2H2 ZF 114 136
Cmyd_10003405 C2H2 ZF 145 167
Cmyd_10003405 C2H2 ZF 173 190
Cmyd_10003405 C2H2 ZF 818 840
Cmyd_10003405 C2H2 ZF 846 868
Cmyd_10003405 C2H2 ZF 874 897
Cmyd_10003405 C2H2 ZF 928 950
Cmyd_10003405 C2H2 ZF 959 982
Cmyd_10003405 C2H2 ZF 1368 1390
Cmyd_10003405 C2H2 ZF 1396 1419
Cmyd_10003405 C2H2 ZF 1669 1691
Cmyd_10003405 C2H2 ZF 1697 1719

Links

Other C2H2 ZF family TFs
Other Chelonia mydas TFs

20 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSNLEG00000011554 Nomascus leucogenys ENSNLEG00000011554 I 0.803
RREB1 Monodelphis domestica ENSMODG00000009892 I 0.803
ENSPANG00000019553 Papio anubis ENSPANG00000019553 I 0.803
ENSPPYG00000016204 Pongo abelii ENSPPYG00000016204 I 0.803
ENSP00000369270 Macaca fascicularis ENSP00000369270 I 0.803
RREB1 Pan troglodytes ENSPTRG00000017697 I 0.803
ENSMEUG00000015377 Macropus eugenii ENSMEUG00000015377 I 0.803
RREB1 Macaca mulatta ENSMMUG00000007852 I 0.803
ENSCSAG00000007376 Chlorocebus sabaeus ENSCSAG00000007376 I 0.803
RREB1 Gorilla gorilla ENSGGOG00000004561 I 0.803
RREB1 Homo sapiens ENSG00000124782 D 0.803
ENSAMEG00000017412 Ailuropoda melanoleuca ENSAMEG00000017412 I 0.802
Rreb1 Rattus norvegicus ENSRNOG00000015701 I 0.799
RREB1 Canis familiaris ENSCAFG00000009527 I 0.798
RREB1 Loxodonta africana ENSLAFG00000005300 I 0.795
ENSMPUG00000000558 Mustela putorius furo ENSMPUG00000000558 I 0.795
Rreb1 Mus musculus ENSMUSG00000039087 I 0.795
RREB1 Pteropus vampyrus ENSPVAG00000014081 I 0.787
RREB1 Felis catus ENSFCAG00000030069 I 0.786
RREB1 Anolis carolinensis ENSACAG00000000520 I 0.775