Cmyd_10003405 (Chelonia mydas)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Cmyd_10003405 T134218_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RREB1
M02665_2.00 		Homo sapiens
MCMCMAMMCAMCMMCHMMSV
BSKKDGKKGKTGKKTKGKGK		 SELEX
Mathelier et al.(2014)
MA0073.1 		0.803 0.945
RREB1
M10203_2.00 		Homo sapiens
MCCCAAMCMMMCMM
KKGKKKGKTTGGGK		 Transfac
Matys et al.(2006)
V$RREB1_01 		0.803 0.945
RREB1
M10204_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RREB1_Q5 		0.803 0.945
RREB1
M10205_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RREB_Q5 		0.803 0.945
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cmyd_10003405 C2H2 ZF 114 136
Cmyd_10003405 C2H2 ZF 145 167
Cmyd_10003405 C2H2 ZF 173 190
Cmyd_10003405 C2H2 ZF 818 840
Cmyd_10003405 C2H2 ZF 846 868
Cmyd_10003405 C2H2 ZF 874 897
Cmyd_10003405 C2H2 ZF 928 950
Cmyd_10003405 C2H2 ZF 959 982
Cmyd_10003405 C2H2 ZF 1368 1390
Cmyd_10003405 C2H2 ZF 1396 1419
Cmyd_10003405 C2H2 ZF 1669 1691
Cmyd_10003405 C2H2 ZF 1697 1719

Links

Other C2H2 ZF family TFs
Other Chelonia mydas TFs

Invalid Input OrderBy

20 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action