CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Cmyd_10003951
(
Chelonia mydas
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
Cmyd_10003951
T134244_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ZNF384
M04451_2.00
Homo sapiens
TTTTBNNNNNNNNNNNNVAAAA
TTTTBNNNNNNNNNNNNVAAAA
SELEX
Yin et al.(2017)
ZNF384_eDBD_HT-SELEX
0.807
0.940
ZNF384
M08306_2.00
Homo sapiens
CTTTTTTTT
AAAAAAAAG
ChIP-seq
Schmitges et al.(2016)
Q8TF68_1-3.RCADE
0.807
0.940
ZNF384
M08090_2.00
Homo sapiens
WTTTTTTTNHNN
NNDNAAAAAAAW
ChIP-seq
Mathelier et al.(2014)
MA1125.1
0.807
0.940
ZNF384
M08888_2.00
Homo sapiens
BVNNBTTTTTSC
GSAAAAAVNNBV
Misc
Kulakovskiy et al.(2013)
ZN384_HUMAN.H11MO.0.C
0.807
0.940
ZNF384
M10209_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CIZ_01
0.807
0.940
ZNF384
M04452_2.00
Homo sapiens
KTTTYHNNNNNNNNNNDRAAAV
BTTTYHNNNNNNNNNNDRAAAM
SELEX
Yin et al.(2017)
ZNF384_eDBD_Methyl-HT-SELEX
0.807
0.940
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cmyd_10003951
C2H2 ZF
177
199
YRCRMCSLTFYSKSEMQIHSKSH
Cmyd_10003951
C2H2 ZF
205
227
HKCPHCSKSFANSSYLAQHIRIH
Cmyd_10003951
C2H2 ZF
233
255
YTCSYCQKAFRQLSHLQQHTRIH
Cmyd_10003951
C2H2 ZF
266
288
HKCPHCSKSFANTSYLAQHLRIH
Cmyd_10003951
C2H2 ZF
294
316
YSCRYCQKAFRQLSHLQQHTRIH
Cmyd_10003951
C2H2 ZF
322
346
YKCAHPGCEKAFTQLSNLQSHRRQH
Cmyd_10003951
C2H2 ZF
352
374
FKCHNCHRAYTDAASLEVHLATH
Cmyd_10003951
C2H2 ZF
382
404
YTCSICSRAYTSETYLMKHMRKH
Links
Other
C2H2 ZF
family TFs
Other
Chelonia mydas
TFs
50 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy