Cmyd_10003951 (Chelonia mydas)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Cmyd_10003951 T134244_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ZNF384
M04451_2.00
Homo sapiens
TTTTBNNNNNNNNNNNNVAAAA

TTTTBNNNNNNNNNNNNVAAAA
SELEX
Yin et al.(2017)
ZNF384_eDBD_HT-SELEX
0.807 0.940
ZNF384
M08306_2.00
Homo sapiens
CTTTTTTTT

AAAAAAAAG
ChIP-seq
Schmitges et al.(2016)
Q8TF68_1-3.RCADE
0.807 0.940
ZNF384
M08090_2.00
Homo sapiens
WTTTTTTTNHNN

NNDNAAAAAAAW
ChIP-seq
Mathelier et al.(2014)
MA1125.1
0.807 0.940
ZNF384
M08888_2.00
Homo sapiens
BVNNBTTTTTSC

GSAAAAAVNNBV
Misc
Kulakovskiy et al.(2013)
ZN384_HUMAN.H11MO.0.C
0.807 0.940
ZNF384
M10209_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CIZ_01
0.807 0.940
ZNF384
M04452_2.00
Homo sapiens
KTTTYHNNNNNNNNNNDRAAAV

BTTTYHNNNNNNNNNNDRAAAM
SELEX
Yin et al.(2017)
ZNF384_eDBD_Methyl-HT-SELEX
0.807 0.940
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cmyd_10003951 C2H2 ZF 177 199
Cmyd_10003951 C2H2 ZF 205 227
Cmyd_10003951 C2H2 ZF 233 255
Cmyd_10003951 C2H2 ZF 266 288
Cmyd_10003951 C2H2 ZF 294 316
Cmyd_10003951 C2H2 ZF 322 346
Cmyd_10003951 C2H2 ZF 352 374
Cmyd_10003951 C2H2 ZF 382 404

Links

Other C2H2 ZF family TFs
Other Chelonia mydas TFs

Invalid Input OrderBy

50 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action