Cmyd_10004881 (Chelonia mydas)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Cmyd_10004881 T134259_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
GFI1
M00238_2.00
Homo sapiens
NWAWMNNNN

NNNNKWTWN
PBM
Barrera et al.(2016)
GFI1_REF
0.822 0.986
GFI1
M04507_2.00
Homo sapiens
BMAATCACDGCNHBBCACTMN

NKAGTGVVDNGCHGTGATTKV
SELEX
Yin et al.(2017)
GFI1_eDBD_HT-SELEX
0.822 0.986
Gfi1
M02668_2.00
Rattus norvegicus
NMAATCWVHS

SDBWGATTKN
SELEX
Mathelier et al.(2014)
MA0038.1
0.822 0.986
GFI1
M08905_2.00
Homo sapiens
MAATCWSWGY

RCWSWGATTK
Misc
Kulakovskiy et al.(2013)
GFI1_HUMAN.H11MO.0.C
0.822 0.986
Gfi1
M08984_2.00
Mus musculus
MAATCWSWGY

RCWSWGATTK
Misc
Kulakovskiy et al.(2013)
GFI1_MOUSE.H11MO.0.C
0.822 0.986
GFI1
M10235_2.00
Homo sapiens
NNNNNNNRCHSWGATTTDNNBNNN

NNNVNNHAAATCWSDGYNNNNNNN
Transfac
Matys et al.(2006)
V$GFI1_01
0.822 0.986
GFI1
M10236_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GFI1_Q6_01
0.822 0.986
GFI1
M04508_2.00
Homo sapiens
NNAGTGVVNHGCWSTGATTKV

BMAATCASWGCDNBBCACTNN
SELEX
Yin et al.(2017)
GFI1_eDBD_Methyl-HT-SELEX
0.822 0.986
GFI1
M00236_2.00
Homo sapiens
NAATMNNNN

NNNNKATTN
PBM
Barrera et al.(2016)
GFI1_L400F
0.820 0.978
GFI1
M00237_2.00
Homo sapiens
ATATCAVD

HBTGATAT
PBM
Barrera et al.(2016)
GFI1_N382S
0.785 0.978
GFI1B
M00240_2.00
Homo sapiens
NNAAATCWSDN

NHSWGATTTNN
PBM
Barrera et al.(2016)
GFI1B_REF
0.782 0.884
GFI1B
M04523_2.00
Homo sapiens
NMAATCASDGCNNBBCACTNN

NNAGTGVVNNGCHSTGATTKN
SELEX
Yin et al.(2017)
GFI1B_eDBD_HT-SELEX
0.782 0.884
Gfi1b
M08098_2.00
Mus musculus
MAATCWCWGCH

DGCWGWGATTK
ChIP-seq
Mathelier et al.(2014)
MA0483.1
0.782 0.884
GFI1B
M08909_2.00
Homo sapiens
MAATCWSDGY

RCHSWGATTK
Misc
Kulakovskiy et al.(2013)
GFI1B_HUMAN.H11MO.0.A
0.782 0.884
Gfi1b
M08977_2.00
Mus musculus
MAAYCACWGH

DCWGWGRTTK
Misc
Kulakovskiy et al.(2013)
GFI1B_MOUSE.H11MO.0.A
0.782 0.884
Gfi1b
M09514_2.00
Mus musculus
MAATCWSWGC

GCWSWGATTK
Misc
Heinz et al.(2010)
HPC7-Gfi1b_GSE22178
0.782 0.884
GFI1B
M10243_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GFI1B_01
0.782 0.884
GFI1B
M10244_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GFI1B_Q6
0.782 0.884
GFI1B
M04524_2.00
Homo sapiens
NMAATCASWGCDNNBCACTHN

NDAGTGVNNHGCWSTGATTKN
SELEX
Yin et al.(2017)
GFI1B_eDBD_Methyl-HT-SELEX
0.782 0.884
GFI1B
M00239_2.00
Homo sapiens
NNAAATCWSDN

NHSWGATTTNN
PBM
Barrera et al.(2016)
GFI1B_A204T
0.772 0.877
sens-2
M06165_2.00
Drosophila melanogaster
RYAAATCWSDGCAYNC

GNRTGCHSWGATTTRY
B1H
Zhu et al.(2011)
sens-2_SANGER_2.5_FBgn0051632
0.769 0.833
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cmyd_10004881 C2H2 ZF 351 374
Cmyd_10004881 C2H2 ZF 380 402
Cmyd_10004881 C2H2 ZF 408 430
Cmyd_10004881 C2H2 ZF 436 458
Cmyd_10004881 C2H2 ZF 464 486
Cmyd_10004881 C2H2 ZF 492 515

Links

Other C2H2 ZF family TFs
Other Chelonia mydas TFs

136 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ENSPSIG00000008734 Pelodiscus sinensis ENSPSIG00000008734 I 0.825
GFI1 Meleagris gallopavo ENSMGAG00000008187 I 0.822
Gfi1 Rattus norvegicus ENSRNOG00000002042 D 0.822
GFI1 Dasypus novemcinctus ENSDNOG00000000782 I 0.822
ENSSTOG00000014583 Ictidomys tridecemlineatus ENSSTOG00000014583 I 0.822
GFI1 Taeniopygia guttata ENSTGUG00000006060 I 0.822
gfi1ab Danio rerio ENSDARG00000044457 I 0.822
ENSMPUG00000004178 Mustela putorius furo ENSMPUG00000004178 I 0.822
GFI1 Gorilla gorilla ENSGGOG00000005320 I 0.822
GFI1 Homo sapiens ENSG00000162676 D 0.822
ENSPANG00000016433 Papio anubis ENSPANG00000016433 I 0.822
ENSGALG00000005940 Gallus gallus ENSGALG00000005940 I 0.822
GFI1 Felis catus ENSFCAG00000005914 I 0.822
GFI1 Erinaceus europaeus ENSEEUG00000000198 I 0.822
Gfi1 Mus musculus ENSMUSG00000029275 D 0.822
Aan_R000889 Calypte anna Aan_R000889 I 0.822
GFI1 Otolemur garnettii ENSOGAG00000027913 I 0.822
Gfo_R010648 Geospiza fortis Gfo_R010648 I 0.822
ENSAMEG00000013858 Ailuropoda melanoleuca ENSAMEG00000013858 I 0.822
ENSNLEG00000010470 Nomascus leucogenys ENSNLEG00000010470 I 0.822
GFI1 Loxodonta africana ENSLAFG00000018346 I 0.822
Tal_R006464 Tyto alba Tal_R006464 I 0.822
ENSAPLG00000015700 Anas platyrhynchos ENSAPLG00000015700 I 0.822
Brh_R002465 Buceros rhinoceros Brh_R002465 I 0.822
Afo_R006147 Aptenodytes forsteri Afo_R006147 I 0.822
GFI1 Monodelphis domestica ENSMODG00000011802 I 0.822
GFI1 Callithrix jacchus ENSCJAG00000017609 I 0.822
GFI1 Canis familiaris ENSCAFG00000020155 I 0.822
ENSMMUG00000005068 Macaca mulatta ENSMMUG00000005068 I 0.822
Alligator_sinensis_CCG007476.1 Alligator sinensis Alligator_sinensis_CCG007476.1 I 0.822
GFI1 Ochotona princeps ENSOPRG00000001473 I 0.822
ENSGMOG00000007737 Gadus morhua ENSGMOG00000007737 I 0.820
ENSLACG00000013362 Latimeria chalumnae ENSLACG00000013362 I 0.820
GFI1 Myotis lucifugus ENSMLUG00000015191 I 0.820
GFI1 Sus scrofa ENSSSCG00000006902 I 0.820
GFI1 Bos taurus ENSBTAG00000016723 I 0.820
Ogr09401 Ophisaurus gracilis Ogr09401 I 0.820
GFI1 Anolis carolinensis ENSACAG00000004498 I 0.820
ENSPFOG00000023214 Poecilia formosa ENSPFOG00000023214 I 0.820
GFI1 Tursiops truncatus ENSTTRG00000000082 I 0.820
GFI1 Pteropus vampyrus ENSPVAG00000006928 I 0.820
GFI1 Equus caballus ENSECAG00000006647 I 0.820
gfi1 Xenopus tropicalis XB-GENE-960553 I 0.820
GFI1 Cavia porcellus ENSCPOG00000011727 I 0.819
ENSONIG00000019246 Oreochromis niloticus ENSONIG00000019246 I 0.818
ENSLOCG00000004711 Lepisosteus oculatus ENSLOCG00000004711 I 0.816
Pvit_00259 Pogona vitticeps Pvit_00259 I 0.815
gfi1aa Danio rerio ENSDARG00000020746 I 0.812
ENSAMXG00000004835 Astyanax mexicanus ENSAMXG00000004835 I 0.812
gfi1ab Tetraodon nigroviridis ENSTNIG00000000651 I 0.812
gfi1ab Takifugu rubripes ENSTRUG00000000415 I 0.810
ENSP00000399719 Macaca fascicularis ENSP00000399719 I 0.809
ENSBTAP00000022231-D1 Bos grunniens ENSBTAP00000022231-D1 I 0.807
gfi1aa Gasterosteus aculeatus ENSGACG00000015674 I 0.804
gfi1ab Gasterosteus aculeatus ENSGACG00000004257 I 0.802
ENSXMAG00000009274 Xiphophorus maculatus ENSXMAG00000009274 I 0.798
gfi1aa Oryzias latipes ENSORLG00000005060 I 0.798
ENSPFOG00000017327 Poecilia formosa ENSPFOG00000017327 I 0.798
ENSONIG00000010573 Oreochromis niloticus ENSONIG00000010573 I 0.798
gfi1aa Takifugu rubripes ENSTRUG00000004744 I 0.796
Cmyd_10017172 Chelonia mydas Cmyd_10017172 I 0.789
Tal_R001363 Tyto alba Tal_R001363 I 0.788
ENSLACG00000012207 Latimeria chalumnae ENSLACG00000012207 I 0.786
ENSPSIG00000012112 Pelodiscus sinensis ENSPSIG00000012112 I 0.786
ENSGMOG00000017295 Gadus morhua ENSGMOG00000017295 I 0.786
SPU_012645 Strongylocentrotus purpuratus SPU_012645 I 0.785
ENSSTOG00000022285 Ictidomys tridecemlineatus ENSSTOG00000022285 I 0.785
Afo_R001655 Aptenodytes forsteri Afo_R001655 I 0.784
GFI1B Felis catus ENSFCAG00000027147 I 0.784
ENSFALG00000001479 Ficedula albicollis ENSFALG00000001479 I 0.784
Aan_R008865 Calypte anna Aan_R008865 I 0.784
GFI1B Meleagris gallopavo ENSMGAG00000006129 I 0.784
GFI1B Sus scrofa ENSSSCG00000005737 I 0.784
GFI1B Cavia porcellus ENSCPOG00000026928 I 0.784
GFI1B Dasypus novemcinctus ENSDNOG00000036528 I 0.784
gfi1b Gasterosteus aculeatus ENSGACG00000018134 I 0.784
Gfo_R007994 Geospiza fortis Gfo_R007994 I 0.784
GFI1B Canis familiaris ENSCAFG00000019877 I 0.784
ENSAPLG00000003373 Anas platyrhynchos ENSAPLG00000003373 I 0.784
ENSMPUG00000012489 Mustela putorius furo ENSMPUG00000012489 I 0.784
GFI1B Gallus gallus ENSGALG00000003478 I 0.784
GFI1B Otolemur garnettii ENSOGAG00000008879 I 0.784
GFI1B Callithrix jacchus ENSCJAG00000018071 I 0.782
ENSP00000361195 Macaca fascicularis ENSP00000361195 I 0.782
ENSCSAG00000015008 Chlorocebus sabaeus ENSCSAG00000015008 I 0.782
gfi1b Danio rerio ENSDARG00000079947 I 0.782
ENSPFOG00000003460 Poecilia formosa ENSPFOG00000003460 I 0.782
Gfi1b Mus musculus ENSMUSG00000026815 D 0.782
ENSNLEG00000012963 Nomascus leucogenys ENSNLEG00000012963 I 0.782
GFI1B Gorilla gorilla ENSGGOG00000015828 I 0.782
ENSGMOG00000019123 Gadus morhua ENSGMOG00000019123 I 0.782
ENSLOCG00000005750 Lepisosteus oculatus ENSLOCG00000005750 I 0.782
e_gw.11.853.1 Branchiostoma floridae e_gw.11.853.1 I 0.782
Gfi1b Rattus norvegicus ENSRNOG00000011353 I 0.782
GFI1B Oryctolagus cuniculus ENSOCUG00000001793 I 0.782
GFI1B Pan troglodytes ENSPTRG00000021505 I 0.782
GFI1B Equus caballus ENSECAG00000008127 I 0.782
Gfi1b Dipodomys ordii ENSDORG00000000342 I 0.782
GFI1B Homo sapiens ENSG00000165702 D 0.782
ENSPPYG00000019718 Pongo abelii ENSPPYG00000019718 I 0.782
GFI1B Procavia capensis ENSPCAG00000012329 I 0.782
ENSPANG00000024216 Papio anubis ENSPANG00000024216 I 0.782
GFI1B Monodelphis domestica ENSMODG00000012600 I 0.781
GFI1B Loxodonta africana ENSLAFG00000022367 I 0.779
GFI1B Ornithorhynchus anatinus ENSOANG00000014723 I 0.778
gfi1b Tetraodon nigroviridis ENSTNIG00000003834 I 0.774
gfi1b Takifugu rubripes ENSTRUG00000004525 I 0.774
ENSONIG00000013011 Oreochromis niloticus ENSONIG00000013011 I 0.774
CGI_10011355 Crassostrea gigas CGI_10011355 I 0.773
ENSBTAP00000016974-D1 Bos grunniens ENSBTAP00000016974-D1 I 0.772
GFI1B Bos taurus ENSBTAG00000012772 I 0.772
gfi1b Oryzias latipes ENSORLG00000014390 I 0.772
GFI1B Macaca mulatta ENSMMUG00000005948 I 0.772
LotgiG129344 Lottia gigantea LotgiG129344 I 0.771
GE14143 Drosophila yakuba FBgn0231766 I 0.769
GFI1B Myotis lucifugus ENSMLUG00000006673 I 0.769
sens-2 Drosophila melanogaster FBgn0051632 D 0.769
MDOA011065 Musca domestica MDOA011065 I 0.769
GF15430 Drosophila ananassae FBgn0092455 I 0.769
GA16348 Drosophila pseudoobscura FBgn0076363 I 0.769
GG10437 Drosophila erecta FBgn0102746 I 0.769
tetur16g01570 Tetranychus urticae tetur16g01570 I 0.769
GK24242 Drosophila willistoni FBgn0226203 I 0.769
GM16223 Drosophila sechellia FBgn0171139 I 0.769
GJ21268 Drosophila virilis FBgn0208401 I 0.769
GH13715 Drosophila grimshawi FBgn0121191 I 0.769
GL26188 Drosophila persimilis FBgn0163770 I 0.769
GI23984 Drosophila mojavensis FBgn0146708 I 0.769
gfi1b Xenopus tropicalis XB-GENE-944426 I 0.766
gfi1b.L Xenopus laevis XB-GENE-944429 I 0.766
Sakowv30015313m.g Saccoglossus kowalevskii Sakowv30015313m.g I 0.766
LotgiG83709 Lottia gigantea LotgiG83709 I 0.765
Myotis_brandtii_GFI1B_10010118 Myotis brandtii Myotis_brandtii_GFI1B_10010118 I 0.765
CGI_10017941 Crassostrea gigas CGI_10017941 I 0.763
Sakowv30015302m.g Saccoglossus kowalevskii Sakowv30015302m.g I 0.762
CapteG45287 Capitella teleta CapteG45287 I 0.759