Cmyd_10005145 (Chelonia mydas)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Cmyd_10005145 T134263_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ZBTB48
M08391_2.00
Homo sapiens
HHDNTCCCTDR

YHAGGGANHDD
ChIP-seq
Schmitges et al.(2016)
P10074.MEME
0.811 0.952
ZBTB48
M08956_2.00
Homo sapiens
BHBRVTCCCTDR

YHAGGGABYVDV
Misc
Kulakovskiy et al.(2013)
ZBT48_HUMAN.H11MO.0.C
0.811 0.952
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cmyd_10005145 C2H2 ZF 115 137
Cmyd_10005145 C2H2 ZF 143 164
Cmyd_10005145 C2H2 ZF 174 196
Cmyd_10005145 C2H2 ZF 202 225
Cmyd_10005145 C2H2 ZF 260 283
Cmyd_10005145 C2H2 ZF 289 311
Cmyd_10005145 C2H2 ZF 317 339
Cmyd_10005145 C2H2 ZF 345 368
Cmyd_10005145 C2H2 ZF 374 396
Cmyd_10005145 C2H2 ZF 402 424

Links

Other C2H2 ZF family TFs
Other Chelonia mydas TFs

39 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
F775_21880 Aegilops tauschii F775_21880 N 0.000
F775_01937 Aegilops tauschii F775_01937 N 0.000
BRADI4G42120 Brachypodium distachyon BRADI4G42120 N 0.000
MLOC_22590 Hordeum vulgare MLOC_22590 N 0.000
MLOC_15316 Hordeum vulgare MLOC_15316 N 0.000
LPERR11G02970 Leersia perrieri LPERR11G02970 N 0.000
LPERR12G03230 Leersia perrieri LPERR12G03230 N 0.000
GSMUA_Achr5G17460_001 Musa acuminata GSMUA_Achr5G17460_001 N 0.000
GSMUA_Achr9G02570_001 Musa acuminata GSMUA_Achr9G02570_001 N 0.000
OBART12G03450 Oryza barthii OBART12G03450 N 0.000
OBART11G03540 Oryza barthii OBART11G03540 N 0.000
OB12G13360 Oryza brachyantha OB12G13360 N 0.000
OB11G12850 Oryza brachyantha OB11G12850 N 0.000
ORGLA11G0032900 Oryza glaberrima ORGLA11G0032900 N 0.000
OGLUM11G03180 Oryza glumaepatula OGLUM11G03180 N 0.000
OGLUM12G04120 Oryza glumaepatula OGLUM12G04120 N 0.000
BGIOSGA034828 Oryza indica BGIOSGA034828 N 0.000
BGIOSGA034827 Oryza indica BGIOSGA034827 N 0.000
BGIOSGA037021 Oryza indica BGIOSGA037021 N 0.000
OLONG_000717 Oryza longistaminata OLONG_000717 N 0.000
OLONG_019285 Oryza longistaminata OLONG_019285 N 0.000
OMERI11G03240 Oryza meridionalis OMERI11G03240 N 0.000
ONIVA07G22930 Oryza nivara ONIVA07G22930 N 0.000
OPUNC11G03240 Oryza punctata OPUNC11G03240 N 0.000
OPUNC12G03250 Oryza punctata OPUNC12G03250 N 0.000
ORUFI11G03430 Oryza rufipogon ORUFI11G03430 N 0.000
ORUFI12G03900 Oryza rufipogon ORUFI12G03900 N 0.000
OS11G0154900 Oryza sativa OS11G0154900 N 0.000
Pavir.Hb01810 Panicum virgatum Pavir.Hb01810 N 0.000
Pavir.Cb02058 Panicum virgatum Pavir.Cb02058 N 0.000
Pavir.Ca00162 Panicum virgatum Pavir.Ca00162 N 0.000
Pavir.J28001 Panicum virgatum Pavir.J28001 N 0.000
Si026452m.g Setaria italica Si026452m.g N 0.000
Si012481m.g Setaria italica Si012481m.g N 0.000
Sb05g003420 Sorghum bicolor Sb05g003420 N 0.000
Sb08g003500 Sorghum bicolor Sb08g003500 N 0.000
Traes_5DL_A528A05A3 Triticum aestivum Traes_5DL_A528A05A3 N 0.000
Traes_5BL_6C613A3D9 Triticum aestivum Traes_5BL_6C613A3D9 N 0.000
Traes_5AL_09C375647 Triticum aestivum Traes_5AL_09C375647 N 0.000
Traes_4DS_FAFED0328 Triticum aestivum Traes_4DS_FAFED0328 N 0.000
Traes_4BS_8439AC445 Triticum aestivum Traes_4BS_8439AC445 N 0.000
Traes_4AL_792F1D482 Triticum aestivum Traes_4AL_792F1D482 N 0.000
TRIUR3_33961 Triticum urartu TRIUR3_33961 N 0.000