CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Cmyd_10005916
(
Chelonia mydas
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
Cmyd_10005916
T134287_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ZNF653
M08248_2.00
Homo sapiens
NWTTHNYDHCYKCCGACWNHWAWD
HWTWDNWGTCGGMRGDHRNDAAWN
ChIP-seq
Najafabadi et al.(2015b)
ZNF653
0.811
0.965
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cmyd_10005916
C2H2 ZF
355
380
FHCPYEGCSQVYVALSSFQNHVNLVH
Cmyd_10005916
C2H2 ZF
386
410
KVCPHPGCGKKFYLSNHLRRHMIIH
Cmyd_10005916
C2H2 ZF
416
438
FTCETCGKSFKRKNHLEVHRRTH
Cmyd_10005916
C2H2 ZF
444
466
LQCEICGYQCRQRASLNWHMKKH
Cmyd_10005916
C2H2 ZF
474
497
FTCEHCGKRFEKMDSVKFHKLKSH
Links
Other
C2H2 ZF
family TFs
Other
Chelonia mydas
TFs
34 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy