Cmyd_10007196 (Chelonia mydas)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Cmyd_10007196 T134300_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PRDM4
M02881_2.00 		Homo sapiens
TTTCAAGGCCCCC
GGGGGCCTTGAAA		 SELEX
Jolma et al.(2013)
PRDM4_1 		0.817 0.964
PRDM4
M04421_2.00 		Homo sapiens
YRRCNGTTTCAAGKCYMCCC
GGGKRGMCTTGAAACNGYYR		 SELEX
Yin et al.(2017)
PRDM4_eDBD_HT-SELEX 		0.817 0.964
PRDM4
M04422_2.00 		Homo sapiens
YRGCRGTTTCRAGGSTTVCC
GGBAASCCTYGAAACYGCYR		 SELEX
Yin et al.(2017)
PRDM4_eDBD_Methyl-HT-SELEX_1 		0.817 0.964
PRDM4
M04423_2.00 		Homo sapiens
YRRCRGTTTCRAGKSYNCCC
GGGNRSMCTYGAAACYGYYR		 SELEX
Yin et al.(2017)
PRDM4_eDBD_Methyl-HT-SELEX_2 		0.817 0.964
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cmyd_10007196 C2H2 ZF 565 587
Cmyd_10007196 C2H2 ZF 593 615
Cmyd_10007196 C2H2 ZF 621 643
Cmyd_10007196 C2H2 ZF 649 671
Cmyd_10007196 C2H2 ZF 677 699
Cmyd_10007196 C2H2 ZF 705 726

Links

Other C2H2 ZF family TFs
Other Chelonia mydas TFs

53 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSPSIG00000012066 Pelodiscus sinensis ENSPSIG00000012066 I 0.825
ENSMEUG00000004495 Macropus eugenii ENSMEUG00000004495 I 0.825
PRDM4 Ornithorhynchus anatinus ENSOANG00000005526 I 0.825
Alligator_sinensis_CCG012513.1 Alligator sinensis Alligator_sinensis_CCG012513.1 I 0.825
Pvit_09756 Pogona vitticeps Pvit_09756 I 0.825
ENSTGUG00000015149 Taeniopygia guttata ENSTGUG00000015149 I 0.823
ENSAPLG00000009846 Anas platyrhynchos ENSAPLG00000009846 I 0.823
PRDM4 Gallus gallus ENSGALG00000012619 I 0.823
Tal_R009708 Tyto alba Tal_R009708 I 0.823
ENSTGUG00000010962 Taeniopygia guttata ENSTGUG00000010962 I 0.823
PRDM4 Meleagris gallopavo ENSMGAG00000012815 I 0.823
Aan_R008654 Calypte anna Aan_R008654 I 0.823
ENSFALG00000013342 Ficedula albicollis ENSFALG00000013342 I 0.823
Gfo_R004636 Geospiza fortis Gfo_R004636 I 0.823
PRDM4 Monodelphis domestica ENSMODG00000001448 I 0.823
Brh_R007685 Buceros rhinoceros Brh_R007685 I 0.823
Afo_R011067 Aptenodytes forsteri Afo_R011067 I 0.823
ENSCPOG00000022385 Cavia porcellus ENSCPOG00000022385 I 0.822
Prdm4 Rattus norvegicus ENSRNOG00000004962 I 0.817
PRDM4 Procavia capensis ENSPCAG00000009987 I 0.817
ENSPPYG00000004913 Pongo abelii ENSPPYG00000004913 I 0.817
PRDM4 Pan troglodytes ENSPTRG00000005400 I 0.817
PRDM4 Vicugna pacos ENSVPAG00000002215 I 0.817
ENSP00000228437 Macaca fascicularis ENSP00000228437 I 0.817
Myotis_brandtii_PRDM4_10020406 Myotis brandtii Myotis_brandtii_PRDM4_10020406 I 0.817
ENSP00000228437-D1 Bos grunniens ENSP00000228437-D1 I 0.817
ENSPANG00000022084 Papio anubis ENSPANG00000022084 I 0.817
ENSSTOG00000016168 Ictidomys tridecemlineatus ENSSTOG00000016168 I 0.817
PRDM4 Tursiops truncatus ENSTTRG00000011056 I 0.817
PRDM4 Sus scrofa ENSSSCG00000000160 I 0.817
ENSNLEG00000006748 Nomascus leucogenys ENSNLEG00000006748 I 0.817
PRDM4 Dasypus novemcinctus ENSDNOG00000032478 I 0.817
PRDM4 Equus caballus ENSECAG00000015423 I 0.817
PRDM4 Felis catus ENSFCAG00000022478 I 0.817
PRDM4 Homo sapiens ENSG00000110851 D 0.817
ENSCSAG00000002896 Chlorocebus sabaeus ENSCSAG00000002896 I 0.817
PRDM4 Callithrix jacchus ENSCJAG00000015261 I 0.817
ENSAMEG00000016174 Ailuropoda melanoleuca ENSAMEG00000016174 I 0.817
PRDM4 Bos taurus ENSBTAG00000012999 I 0.817
PRDM4 Canis familiaris ENSCAFG00000001788 I 0.817
PRDM4 Ochotona princeps ENSOPRG00000010192 I 0.817
PRDM4 Gorilla gorilla ENSGGOG00000001244 I 0.817
Prdm4 Mus musculus ENSMUSG00000035529 I 0.817
ENSOARG00000017955 Ovis aries ENSOARG00000017955 I 0.817
PRDM4 Otolemur garnettii ENSOGAG00000011945 I 0.817
PRDM4 Loxodonta africana ENSLAFG00000001483 I 0.817
ENSMPUG00000012238 Mustela putorius furo ENSMPUG00000012238 I 0.817
PRDM4 Macaca mulatta ENSMMUG00000015550 I 0.817
PRDM4 Myotis lucifugus ENSMLUG00000000767 I 0.817
PRDM4 Anolis carolinensis ENSACAG00000014907 I 0.815
PRDM4 Choloepus hoffmanni ENSCHOG00000001744 I 0.815
PRDM4 Microcebus murinus ENSMICG00000007807 I 0.794
PRDM4 Erinaceus europaeus ENSEEUG00000006569 I 0.775