CIS-BP Database: Catalog of Inferred Sequence Binding Preferences - Update
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Cmyd_10008592
(
Chelonia mydas
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
Cmyd_10008592
T134318_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
BCL11A
M07926_2.00
Homo sapiens
BTYTCASTTCCYYHH
DDRRGGAASTGARAV
ChIP-seq
Gerstein et al.(2012)
GM12878_BCL11A_HudsonAlpha
0.825
0.991
BCL11A
M08881_2.00
Homo sapiens
BHBYCABTTCCYBHNYN
NRNDVRGGAAVTGRVDV
Misc
Kulakovskiy et al.(2013)
BC11A_HUMAN.H11MO.0.A
0.825
0.991
BCL11A
M10187_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$BCL11A_02
0.825
0.991
BCL11B
M04453_2.00
Homo sapiens
GTGAACGBNDNNVCTACAC
GTGTAGBNNHNVCGTTCAC
SELEX
Yin et al.(2017)
BCL11B_eDBD_HT-SELEX
0.806
0.947
BCL11B
M04454_2.00
Homo sapiens
GTGAACGBNDNHVCTACAC
GTGTAGBDNHNVCGTTCAC
SELEX
Yin et al.(2017)
BCL11B_eDBD_Methyl-HT-SELEX
0.806
0.947
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cmyd_10008592
C2H2 ZF
92
113
SCEFCGKTFKFQSNLVVHRRSH
Cmyd_10008592
C2H2 ZF
119
141
YKCSLCDHACTQASKLKRHMKTH
Cmyd_10008592
C2H2 ZF
451
473
DTCEYCGKVFKNCSNLTVHRRSH
Cmyd_10008592
C2H2 ZF
479
501
YKCELCNYACAQSSKLTRHMKTH
Cmyd_10008592
C2H2 ZF
509
532
YKCEICKMPFSVYSTLEKHMKKWH
Links
Other
C2H2 ZF
family TFs
Other
Chelonia mydas
TFs
125 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy