Cmyd_10015325 (Chelonia mydas)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Cmyd_10015325 T134413_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Mtf1
M00136_2.00
Mus musculus
CGTGYGCAM

KTGCRCACG
PBM
Badis et al.(2009)
Mtf1_2377
0.821 0.993
MTF1
M02922_2.00
Homo sapiens
GTGCCGTGTGCAAA

TTTGCACACGGCAC
SELEX
Jolma et al.(2013)
MTF1_1
0.821 0.993
MTF1
M04617_2.00
Homo sapiens
NDNDYCGTGTGCAAARN

NYTTTGCACACGRHNHN
SELEX
Yin et al.(2017)
MTF1_eDBD_HT-SELEX
0.821 0.993
MTF1
M08942_2.00
Homo sapiens
MGKVHCGTGYGCADMDB

VHKHTGCRCACGDBMCK
Misc
Kulakovskiy et al.(2013)
MTF1_HUMAN.H11MO.0.C
0.821 0.993
Mtf1
M08981_2.00
Mus musculus
MGKVHCGTGYGCADMDB

VHKHTGCRCACGDBMCK
Misc
Kulakovskiy et al.(2013)
MTF1_MOUSE.H11MO.0.C
0.821 0.993
MTF1
M10308_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$MTF1_01
0.821 0.993
MTF1
M10309_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$MTF1_02
0.821 0.993
MTF1
M10310_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$MTF1_Q4
0.821 0.993
MTF1
M10311_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$MTF1_Q5
0.821 0.993
MTF1
M04618_2.00
Homo sapiens
NRNRCCGTGTGCAAARV

BYTTTGCACACGGYNYN
SELEX
Yin et al.(2017)
MTF1_eDBD_Methyl-HT-SELEX
0.821 0.993
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cmyd_10015325 C2H2 ZF 141 165
Cmyd_10015325 C2H2 ZF 171 195
Cmyd_10015325 C2H2 ZF 201 225
Cmyd_10015325 C2H2 ZF 230 254
Cmyd_10015325 C2H2 ZF 260 284
Cmyd_10015325 C2H2 ZF 290 314

Links

Other C2H2 ZF family TFs
Other Chelonia mydas TFs

Invalid Input OrderBy

65 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action