Cmyd_10016551 (Chelonia mydas)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Cmyd_10016551 T134427_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
opa
M03668_2.00 		Drosophila melanogaster
BVCCCCCCRYNGHB
VDCNRYGGGGGGBV		 SELEX
Nitta et al.(2015)
opa_1 		0.768 0.880
opa
M05861_2.00 		Drosophila melanogaster
VCCCCCCRYNGNK
MNCNRYGGGGGGB		 SMiLE-seq
Isakova et al.(2017)
Opa 		0.768 0.880
opa
M06468_2.00 		Drosophila melanogaster
GMCCCCCCGCDG
CHGCGGGGGGKC		 B1H
Mathelier et al.(2014)
MA0456.1 		0.768 0.880
opa
M06062_2.00 		Drosophila melanogaster
GMCCCCCCRCDG
CHGYGGGGGGKC		 B1H
Zhu et al.(2011)
opa_NAR_FBgn0003002 		0.768 0.880
opa
M06063_2.00 		Drosophila melanogaster
MKVMMCCCCMCYR
YRGKGGGGKKBMK		 B1H
Zhu et al.(2011)
Opa_SANGER_5_FBgn0003002 		0.768 0.880
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cmyd_10016551 C2H2 ZF 21 48
Cmyd_10016551 C2H2 ZF 54 78
Cmyd_10016551 C2H2 ZF 84 108
Cmyd_10016551 C2H2 ZF 114 138

Links

Other C2H2 ZF family TFs
Other Chelonia mydas TFs

65 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSOANG00000012152 Ornithorhynchus anatinus ENSOANG00000012152 I 0.825
ZIC5 Ochotona princeps ENSOPRG00000007526 I 0.822
ZIC5 Oryctolagus cuniculus ENSOCUG00000026498 I 0.822
ENSDORG00000012706 Dipodomys ordii ENSDORG00000012706 I 0.822
ENSPPYG00000005471 Pongo abelii ENSPPYG00000005471 I 0.822
ZIC5 Sus scrofa ENSSSCG00000009521 I 0.822
ENSMMUP00000019456 Macaca fascicularis ENSMMUP00000019456 I 0.822
ENSACAG00000003701 Anolis carolinensis ENSACAG00000003701 I 0.813
Ogr17257 Ophisaurus gracilis Ogr17257 I 0.813
ENSGMOG00000004419 Gadus morhua ENSGMOG00000004419 I 0.797
ENSONIG00000002719 Oreochromis niloticus ENSONIG00000002719 I 0.795
ENSAMXG00000012318 Astyanax mexicanus ENSAMXG00000012318 I 0.795
ENSSHAG00000015025 Sarcophilus harrisii ENSSHAG00000015025 I 0.795
zic6 Danio rerio ENSDARG00000071496 I 0.795
CGI_10016115 Crassostrea gigas CGI_10016115 I 0.788
NEMVEDRAFT_v1g25267 Nematostella vectensis NEMVEDRAFT_v1g25267 I 0.788
Sakowv30026420m.g Saccoglossus kowalevskii Sakowv30026420m.g I 0.786
XP_002153782.1 Hydra magnipapillata XP_002153782.1 I 0.783
NEMVEDRAFT_v1g121215 Nematostella vectensis NEMVEDRAFT_v1g121215 I 0.783
BXY_1106000 Bursaphelenchus xylophilus BXY_1106000 I 0.783
ZIC1 Monodelphis domestica ENSMODG00000021251 I 0.783
Pvit_01334 Pogona vitticeps Pvit_01334 I 0.783
ENSPFOG00000012980 Poecilia formosa ENSPFOG00000012980 I 0.783
TMUE_s0101002100 Trichuris muris TMUE_s0101002100 I 0.782
KGM_22387 Danaus plexippus KGM_22387 I 0.780
DAPPUDRAFT_290567 Daphnia pulex DAPPUDRAFT_290567 I 0.780
nRc.2.0.1.g22468 Romanomermis culicivorax nRc.2.0.1.g22468 I 0.780
TC010234 Tribolium castaneum TC010234 I 0.780
GB54250 Apis mellifera GB54250 I 0.778
NV11451 Nasonia vitripennis NV11451 I 0.777
AGAP001291 Anopheles gambiae AGAP001291 I 0.777
XP_002159358.1 Hydra magnipapillata XP_002159358.1 I 0.777
nLs.2.1.2.g02824 Litomosoides sigmodontis nLs.2.1.2.g02824 I 0.775
ENSXMAG00000014868 Xiphophorus maculatus ENSXMAG00000014868 I 0.775
ENSPFOG00000023954 Poecilia formosa ENSPFOG00000023954 I 0.775
ENSCSAVG00000001907 Ciona savignyi ENSCSAVG00000001907 I 0.771
CGI_10016117 Crassostrea gigas CGI_10016117 I 0.771
macho1 Ciona intestinalis ENSCING00000007968 I 0.771
MDOA000052 Musca domestica MDOA000052 I 0.771
ENSAMXG00000000658 Astyanax mexicanus ENSAMXG00000000658 I 0.771
SMU15033928 Schmidtea mediterranea SMU15033928 I 0.768
WBGene00239980 Onchocerca volvulus WBGene00239980 I 0.768
GD19752 Drosophila simulans FBgn0191241 I 0.768
tetur11g00650 Tetranychus urticae tetur11g00650 I 0.768
GG12590 Drosophila erecta FBgn0104878 I 0.768
GF18915 Drosophila ananassae FBgn0095929 I 0.768
GA10924 Drosophila pseudoobscura FBgn0070980 I 0.768
opa Drosophila melanogaster FBgn0003002 D 0.768
GI10245 Drosophila mojavensis FBgn0133010 I 0.768
GH23039 Drosophila grimshawi FBgn0130496 I 0.768
GK13239 Drosophila willistoni FBgn0215248 I 0.768
GJ11051 Drosophila virilis FBgn0198317 I 0.768
GM10780 Drosophila sechellia FBgn0165726 I 0.768
GL21621 Drosophila persimilis FBgn0159214 I 0.768
ENSPSIG00000011885 Pelodiscus sinensis ENSPSIG00000011885 I 0.766
csin109208 Clonorchis sinensis csin109208 I 0.766
T265_00048 Opisthorchis viverrini T265_00048 I 0.766
SNAPOd2T00002718001 Oikopleura dioica SNAPOd2T00002718001 I 0.765
TCLT_0000586501 Thelazia callipaeda TCLT_0000586501 I 0.763
SMU15031708 Schmidtea mediterranea SMU15031708 I 0.763
ANCCEY_00370 Ancylostoma ceylanicum ANCCEY_00370 I 0.761
PTRK_0000799900 Parastrongyloides trichosuri PTRK_0000799900 I 0.756
SPAL_0001746600 Strongyloides papillosus SPAL_0001746600 I 0.756
SSTP_0000201100 Strongyloides stercoralis SSTP_0000201100 I 0.756
SVE_0347600 Strongyloides venezuelensis SVE_0347600 I 0.756