CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Cmyd_10017461
(
Chelonia mydas
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
Cmyd_10017461
T134454_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cmyd_10017461
C2H2 ZF
371
393
HKCKFCGKVFGNDSALQIHLRSH
Cmyd_10017461
C2H2 ZF
399
421
YKCNICGNRFTTKGNLKVHFQRH
Cmyd_10017461
C2H2 ZF
600
622
FKCKICGRAFSTKGNLKTHYGVH
Cmyd_10017461
C2H2 ZF
632
654
HSCPICQKKFTNAVVLQQHIRMH
Cmyd_10017461
C2H2 ZF
926
948
HICTTCGKNFSSASALQIHERTH
Cmyd_10017461
C2H2 ZF
954
976
FACTICGRAFTTKGNLKVHVGTH
Links
Other
C2H2 ZF
family TFs
Other
Chelonia mydas
TFs
25 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Alligator_sinensis_CCG001716.1
Alligator sinensis
Alligator_sinensis_CCG001716.1
N
0.827
SALL4
Monodelphis domestica
ENSMODG00000016387
N
0.827
Gfo_R009587
Geospiza fortis
Gfo_R009587
N
0.827
ENSPSIG00000009066
Pelodiscus sinensis
ENSPSIG00000009066
N
0.827
ENSGALG00000007834
Gallus gallus
ENSGALG00000007834
N
0.827
ENSAPLG00000006498
Anas platyrhynchos
ENSAPLG00000006498
N
0.827
ENSFALG00000013149
Ficedula albicollis
ENSFALG00000013149
N
0.827
ENSSHAG00000018013
Sarcophilus harrisii
ENSSHAG00000018013
N
0.825
Pvit_03345
Pogona vitticeps
Pvit_03345
N
0.817
SALL4
Anolis carolinensis
ENSACAG00000012748
N
0.814
sall3a
Takifugu rubripes
ENSTRUG00000017423
N
0.811
ENSAMXG00000011111
Astyanax mexicanus
ENSAMXG00000011111
N
0.809
ENSONIG00000013791
Oreochromis niloticus
ENSONIG00000013791
N
0.802
sall3.S
Xenopus laevis
XB-GENE-17340458
N
0.800
ENSMEUG00000005793
Macropus eugenii
ENSMEUG00000005793
N
0.798
sall3b
Gasterosteus aculeatus
ENSGACG00000002533
N
0.798
ENSAMXG00000001254
Astyanax mexicanus
ENSAMXG00000001254
N
0.792
SALL4
Ornithorhynchus anatinus
ENSOANG00000008667
N
0.790
BAA85900
Xenopus laevis
BAA85900
N
0.787
sall4
Xenopus tropicalis
XB-GENE-485252
N
0.787
ENSGMOG00000013383
Gadus morhua
ENSGMOG00000013383
N
0.777
sall4.L
Xenopus laevis
XB-GENE-485256
N
0.774
sall3b
Oryzias latipes
ENSORLG00000008882
N
0.773
ENSPFOG00000013292
Poecilia formosa
ENSPFOG00000013292
N
0.756
ENSXMAG00000000798
Xiphophorus maculatus
ENSXMAG00000000798
N
0.756