Cmyd_10017824 (Chelonia mydas)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Cmyd_10017824 T134461_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
HIC2
M02902_2.00
Homo sapiens
RTGCCMVNN

NNBKGGCAY
SELEX
Jolma et al.(2013)
HIC2_1
0.825 0.974
Hic1
M00141_2.00
Mus musculus
RTGCCMNBN

NVNKGGCAY
PBM
Badis et al.(2009)
Hic1_2816
0.793 0.861
Hic1
M02933_2.00
Mus musculus
RTGCCAVCYBRTGCCAVC

GBTGGCAYVRGBTGGCAY
SELEX
Jolma et al.(2013)
Hic1_1
0.793 0.861
Hic1
M02934_2.00
Mus musculus
RTGCCAVCN

NGBTGGCAY
SELEX
Jolma et al.(2013)
Hic1_2
0.793 0.861
Hic1
M09003_2.00
Mus musculus
KGGCAMCCH

DGGKTGCCM
Misc
Kulakovskiy et al.(2013)
HIC1_MOUSE.H11MO.0.C
0.793 0.861
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cmyd_10017824 C2H2 ZF 398 420
Cmyd_10017824 C2H2 ZF 456 478
Cmyd_10017824 C2H2 ZF 484 506
Cmyd_10017824 C2H2 ZF 512 534
Cmyd_10017824 C2H2 ZF 540 562

Links

Other C2H2 ZF family TFs
Other Chelonia mydas TFs

Invalid Input OrderBy

64 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action