Cmyd_10017824 (Chelonia mydas)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Cmyd_10017824 T134461_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
HIC2
M02902_2.00
Homo sapiens
RTGCCMVNN

NNBKGGCAY
SELEX
Jolma et al.(2013)
HIC2_1
0.825 0.974
Hic1
M00141_2.00
Mus musculus
RTGCCMNBN

NVNKGGCAY
PBM
Badis et al.(2009)
Hic1_2816
0.793 0.861
Hic1
M02933_2.00
Mus musculus
RTGCCAVCYBRTGCCAVC

GBTGGCAYVRGBTGGCAY
SELEX
Jolma et al.(2013)
Hic1_1
0.793 0.861
Hic1
M02934_2.00
Mus musculus
RTGCCAVCN

NGBTGGCAY
SELEX
Jolma et al.(2013)
Hic1_2
0.793 0.861
Hic1
M09003_2.00
Mus musculus
KGGCAMCCH

DGGKTGCCM
Misc
Kulakovskiy et al.(2013)
HIC1_MOUSE.H11MO.0.C
0.793 0.861
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cmyd_10017824 C2H2 ZF 398 420
Cmyd_10017824 C2H2 ZF 456 478
Cmyd_10017824 C2H2 ZF 484 506
Cmyd_10017824 C2H2 ZF 512 534
Cmyd_10017824 C2H2 ZF 540 562

Links

Other C2H2 ZF family TFs
Other Chelonia mydas TFs

64 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
HIC2 Homo sapiens ENSG00000169635 D 0.825
Hic1 Mus musculus ENSMUSG00000043099 D 0.793
XP_002937184 Xenopus tropicalis XP_002937184 I 0.797
hic1 Takifugu rubripes ENSTRUG00000004590 I 0.798
HIC2 Taeniopygia guttata ENSTGUG00000008699 I 0.827
HIC1 Taeniopygia guttata ENSTGUG00000005835 I 0.795
ENSSTOG00000006360 Ictidomys tridecemlineatus ENSSTOG00000006360 I 0.825
ENSSSCG00000021196 Sus scrofa ENSSSCG00000021196 I 0.825
Hic2 Rattus norvegicus ENSRNOG00000051458 I 0.825
HIC2 Pteropus vampyrus ENSPVAG00000000111 I 0.825
HIC2 Pan troglodytes ENSPTRG00000014112 I 0.825
ENSPSIG00000007902 Pelodiscus sinensis ENSPSIG00000007902 I 0.795
ENSPSIG00000000992 Pelodiscus sinensis ENSPSIG00000000992 I 0.825
ENSPSIG00000000839 Pelodiscus sinensis ENSPSIG00000000839 I 0.825
ENSPPYG00000012022 Pongo abelii ENSPPYG00000012022 I 0.825
ENSPFOG00000020465 Poecilia formosa ENSPFOG00000020465 I 0.821
hic1l Takifugu rubripes ENSTRUG00000013139 I 0.821
ENSXMAG00000020311 Xiphophorus maculatus ENSXMAG00000020311 I 0.821
hic2 Xenopus tropicalis XB-GENE-960044 I 0.826
Tal_R003180 Tyto alba Tal_R003180 I 0.827
Pvit_18806 Pogona vitticeps Pvit_18806 I 0.823
Ogr08090 Ophisaurus gracilis Ogr08090 I 0.823
Myotis_brandtii_HIC2_10021802 Myotis brandtii Myotis_brandtii_HIC2_10021802 I 0.825
Gfo_R010813 Geospiza fortis Gfo_R010813 I 0.827
ENSP00000384889 Macaca fascicularis ENSP00000384889 I 0.825
Brh_R005582 Buceros rhinoceros Brh_R005582 I 0.827
Alligator_sinensis_CCG015471.1 Alligator sinensis Alligator_sinensis_CCG015471.1 I 0.827
Alligator_sinensis_CCG008952.1 Alligator sinensis Alligator_sinensis_CCG008952.1 I 0.793
Afo_R013473 Aptenodytes forsteri Afo_R013473 I 0.795
Afo_R001109 Aptenodytes forsteri Afo_R001109 I 0.827
Aan_R008211 Calypte anna Aan_R008211 I 0.827
Aan_R003503 Calypte anna Aan_R003503 I 0.795
HIC2 Procavia capensis ENSPCAG00000015907 I 0.825
ENSPANG00000024301 Papio anubis ENSPANG00000024301 I 0.825
hic1l Gasterosteus aculeatus ENSGACG00000004268 I 0.821
HIC2 Felis catus ENSFCAG00000023903 I 0.825
ENSFALG00000014495 Ficedula albicollis ENSFALG00000014495 I 0.827
ENSFALG00000006543 Ficedula albicollis ENSFALG00000006543 I 0.795
HIC2 Equus caballus ENSECAG00000017997 I 0.825
HIC2 Dasypus novemcinctus ENSDNOG00000003162 I 0.825
hic2 Danio rerio ENSDARG00000100497 I 0.774
ENSCSAG00000013356 Chlorocebus sabaeus ENSCSAG00000013356 I 0.825
HIC1 Cavia porcellus ENSCPOG00000020382 I 0.793
HIC2 Cavia porcellus ENSCPOG00000001134 I 0.825
HIC2 Canis familiaris ENSCAFG00000032493 I 0.825
HIC2 Bos taurus ENSBTAG00000005951 I 0.809
ENSAPLG00000002158 Anas platyrhynchos ENSAPLG00000002158 I 0.827
hic1 Gasterosteus aculeatus ENSGACG00000010848 I 0.798
ENSGALG00000001403 Gallus gallus ENSGALG00000001403 I 0.827
ENSGALG00000026718 Gallus gallus ENSGALG00000026718 I 0.795
hic1 Oryzias latipes ENSORLG00000004895 I 0.798
ENSONIG00000014335 Oreochromis niloticus ENSONIG00000014335 I 0.821
HIC2 Otolemur garnettii ENSOGAG00000030274 I 0.825
HIC2 Oryctolagus cuniculus ENSOCUG00000010516 I 0.825
Hic2 Mus musculus ENSMUSG00000050240 I 0.825
ENSMPUG00000003198 Mustela putorius furo ENSMPUG00000003198 I 0.825
HIC2 Myotis lucifugus ENSMLUG00000009669 I 0.825
HIC2 Microcebus murinus ENSMICG00000005154 I 0.823
ENSMGAG00000005397 Meleagris gallopavo ENSMGAG00000005397 I 0.795
HIC2 Meleagris gallopavo ENSMGAG00000000949 I 0.827
ENSLOCG00000002169 Lepisosteus oculatus ENSLOCG00000002169 I 0.827
ENSLACG00000007028 Latimeria chalumnae ENSLACG00000007028 I 0.795
HIC2 Gorilla gorilla ENSGGOG00000006041 I 0.825
ENSAMXG00000024918 Astyanax mexicanus ENSAMXG00000024918 I 0.771