Cmyd_10017824 (Chelonia mydas)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Cmyd_10017824 T134461_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
HIC2
M02902_2.00
Homo sapiens
RTGCCMVNN

NNBKGGCAY
SELEX
Jolma et al.(2013)
HIC2_1
0.825 0.974
Hic1
M00141_2.00
Mus musculus
RTGCCMNBN

NVNKGGCAY
PBM
Badis et al.(2009)
Hic1_2816
0.793 0.861
Hic1
M02933_2.00
Mus musculus
RTGCCAVCYBRTGCCAVC

GBTGGCAYVRGBTGGCAY
SELEX
Jolma et al.(2013)
Hic1_1
0.793 0.861
Hic1
M02934_2.00
Mus musculus
RTGCCAVCN

NGBTGGCAY
SELEX
Jolma et al.(2013)
Hic1_2
0.793 0.861
Hic1
M09003_2.00
Mus musculus
KGGCAMCCH

DGGKTGCCM
Misc
Kulakovskiy et al.(2013)
HIC1_MOUSE.H11MO.0.C
0.793 0.861
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cmyd_10017824 C2H2 ZF 398 420
Cmyd_10017824 C2H2 ZF 456 478
Cmyd_10017824 C2H2 ZF 484 506
Cmyd_10017824 C2H2 ZF 512 534
Cmyd_10017824 C2H2 ZF 540 562

Links

Other C2H2 ZF family TFs
Other Chelonia mydas TFs

64 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Aan_R003503 Calypte anna Aan_R003503 I 0.795
Aan_R008211 Calypte anna Aan_R008211 I 0.827
Afo_R001109 Aptenodytes forsteri Afo_R001109 I 0.827
Afo_R013473 Aptenodytes forsteri Afo_R013473 I 0.795
Alligator_sinensis_CCG008952.1 Alligator sinensis Alligator_sinensis_CCG008952.1 I 0.793
Alligator_sinensis_CCG015471.1 Alligator sinensis Alligator_sinensis_CCG015471.1 I 0.827
Brh_R005582 Buceros rhinoceros Brh_R005582 I 0.827
ENSAMXG00000024918 Astyanax mexicanus ENSAMXG00000024918 I 0.771
ENSAPLG00000002158 Anas platyrhynchos ENSAPLG00000002158 I 0.827
ENSCSAG00000013356 Chlorocebus sabaeus ENSCSAG00000013356 I 0.825
ENSFALG00000006543 Ficedula albicollis ENSFALG00000006543 I 0.795
ENSFALG00000014495 Ficedula albicollis ENSFALG00000014495 I 0.827
ENSGALG00000001403 Gallus gallus ENSGALG00000001403 I 0.827
ENSGALG00000026718 Gallus gallus ENSGALG00000026718 I 0.795
ENSLACG00000007028 Latimeria chalumnae ENSLACG00000007028 I 0.795
ENSLOCG00000002169 Lepisosteus oculatus ENSLOCG00000002169 I 0.827
ENSMGAG00000005397 Meleagris gallopavo ENSMGAG00000005397 I 0.795
ENSMPUG00000003198 Mustela putorius furo ENSMPUG00000003198 I 0.825
ENSONIG00000014335 Oreochromis niloticus ENSONIG00000014335 I 0.821
ENSP00000384889 Macaca fascicularis ENSP00000384889 I 0.825
ENSPANG00000024301 Papio anubis ENSPANG00000024301 I 0.825
ENSPFOG00000020465 Poecilia formosa ENSPFOG00000020465 I 0.821
ENSPPYG00000012022 Pongo abelii ENSPPYG00000012022 I 0.825
ENSPSIG00000000839 Pelodiscus sinensis ENSPSIG00000000839 I 0.825
ENSPSIG00000000992 Pelodiscus sinensis ENSPSIG00000000992 I 0.825
ENSPSIG00000007902 Pelodiscus sinensis ENSPSIG00000007902 I 0.795
ENSSSCG00000021196 Sus scrofa ENSSSCG00000021196 I 0.825
ENSSTOG00000006360 Ictidomys tridecemlineatus ENSSTOG00000006360 I 0.825
ENSXMAG00000020311 Xiphophorus maculatus ENSXMAG00000020311 I 0.821
Gfo_R010813 Geospiza fortis Gfo_R010813 I 0.827
HIC1 Taeniopygia guttata ENSTGUG00000005835 I 0.795
HIC1 Cavia porcellus ENSCPOG00000020382 I 0.793
hic1 Oryzias latipes ENSORLG00000004895 I 0.798
hic1 Takifugu rubripes ENSTRUG00000004590 I 0.798
hic1 Gasterosteus aculeatus ENSGACG00000010848 I 0.798
Hic1 Mus musculus ENSMUSG00000043099 D 0.793
hic1l Gasterosteus aculeatus ENSGACG00000004268 I 0.821
hic1l Takifugu rubripes ENSTRUG00000013139 I 0.821
HIC2 Homo sapiens ENSG00000169635 D 0.825
HIC2 Felis catus ENSFCAG00000023903 I 0.825
HIC2 Equus caballus ENSECAG00000017997 I 0.825
hic2 Danio rerio ENSDARG00000100497 I 0.774
HIC2 Cavia porcellus ENSCPOG00000001134 I 0.825
HIC2 Myotis lucifugus ENSMLUG00000009669 I 0.825
HIC2 Canis familiaris ENSCAFG00000032493 I 0.825
HIC2 Bos taurus ENSBTAG00000005951 I 0.809
hic2 Xenopus tropicalis XB-GENE-960044 I 0.826
HIC2 Procavia capensis ENSPCAG00000015907 I 0.825
HIC2 Dasypus novemcinctus ENSDNOG00000003162 I 0.825
HIC2 Gorilla gorilla ENSGGOG00000006041 I 0.825
HIC2 Otolemur garnettii ENSOGAG00000030274 I 0.825
HIC2 Pan troglodytes ENSPTRG00000014112 I 0.825
HIC2 Pteropus vampyrus ENSPVAG00000000111 I 0.825
Hic2 Rattus norvegicus ENSRNOG00000051458 I 0.825
HIC2 Oryctolagus cuniculus ENSOCUG00000010516 I 0.825
Hic2 Mus musculus ENSMUSG00000050240 I 0.825
HIC2 Microcebus murinus ENSMICG00000005154 I 0.823
HIC2 Taeniopygia guttata ENSTGUG00000008699 I 0.827
HIC2 Meleagris gallopavo ENSMGAG00000000949 I 0.827
Myotis_brandtii_HIC2_10021802 Myotis brandtii Myotis_brandtii_HIC2_10021802 I 0.825
Ogr08090 Ophisaurus gracilis Ogr08090 I 0.823
Pvit_18806 Pogona vitticeps Pvit_18806 I 0.823
Tal_R003180 Tyto alba Tal_R003180 I 0.827
XP_002937184 Xenopus tropicalis XP_002937184 I 0.797