CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
ENSBTAP00000016859-D1
(
Bos grunniens
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
ENSBTAP00000016859-D1
T134557_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ZNF454
M04571_2.00
Homo sapiens
WRGCGCCWGGCGCYW
WRGCGCCWGGCGCYW
SELEX
Yin et al.(2017)
ZNF454_eDBD_HT-SELEX_1
0.827
0.989
ZNF454
M04572_2.00
Homo sapiens
TRGCGCCGGCGCYN
NRGCGCCGGCGCYA
SELEX
Yin et al.(2017)
ZNF454_eDBD_HT-SELEX_2
0.827
0.989
ZNF454
M08346_2.00
Homo sapiens
KVVRNCHNYMRGGGCCNDGDGCCWTTB
VAAWGGCHCHNGGCCCYKRNDGNYBBM
ChIP-seq
Schmitges et al.(2016)
Q8N9F8_4-12.RCADE
0.827
0.989
ZNF454
M08256_2.00
Homo sapiens
GWGCYTT
AARGCWC
ChIP-seq
Najafabadi et al.(2015b)
ZNF454
0.827
0.989
ZNF454
M07651_2.00
Homo sapiens
CRKVVRHCCVYCRGGVCCBVGAGCCNKYB
VRMNGGCTCBVGGBCCYGRBRGDYBBMYG
ChIP-seq+ChIP-exo
Barazandeh et al.(2018)
ZNF454.MEME.OriginalMapping
0.827
0.989
ZNF454
M04573_2.00
Homo sapiens
WRGCGCCWGGCGCYW
WRGCGCCWGGCGCYW
SELEX
Yin et al.(2017)
ZNF454_eDBD_Methyl-HT-SELEX_1
0.827
0.989
ZNF454
M04574_2.00
Homo sapiens
TRGCGCCGGCGCYN
NRGCGCCGGCGCYA
SELEX
Yin et al.(2017)
ZNF454_eDBD_Methyl-HT-SELEX_2
0.827
0.989
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSBTAP00000016859-D1
C2H2 ZF
182
204
FECSECGKVFTKSSTLNKHQKIH
ENSBTAP00000016859-D1
C2H2 ZF
221
243
YECRECGKAFHQSTHLIHHQRIH
ENSBTAP00000016859-D1
C2H2 ZF
249
271
YECKECGKAFSVSSSLTYHQKIH
ENSBTAP00000016859-D1
C2H2 ZF
277
299
FECNLCGKAFIRNIHLAHHHRIH
ENSBTAP00000016859-D1
C2H2 ZF
305
327
FKCNICDKAFVCRAHLTKHQNIH
ENSBTAP00000016859-D1
C2H2 ZF
333
355
YKCNECGKAFNQSTSFLQHQRIH
ENSBTAP00000016859-D1
C2H2 ZF
361
383
FECNECGKAFRVNSSLTEHQRIH
ENSBTAP00000016859-D1
C2H2 ZF
389
411
YKCNECGKAFRDNSSFARHRKIH
ENSBTAP00000016859-D1
C2H2 ZF
417
439
YRCGLCEKAFRDQSALAQHQRIH
ENSBTAP00000016859-D1
C2H2 ZF
445
467
YTCNICEKAFSDHSALTQHKRIH
ENSBTAP00000016859-D1
C2H2 ZF
473
495
YKCKICGKAFIRSTHLTQHQRIH
ENSBTAP00000016859-D1
C2H2 ZF
501
523
YKCNKCGKAFNQTANLIQHQRHH
Links
Other
C2H2 ZF
family TFs
Other
Bos grunniens
TFs
26 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy