ENSBTAP00000039405-D1 (Bos grunniens)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 ENSBTAP00000039405-D1 T134646_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
REST
M08084_2.00
Homo sapiens
GSHGCTGTCCRWGGTSCTGAH

DTCAGSACCWYGGACAGCDSC
ChIP-seq
Mathelier et al.(2014)
MA0138.2
0.827 1.000
REST
M07846_2.00
Homo sapiens
TCCVHGGTGCTGAM

KTCAGCACCDBGGA
ChIP-seq
Gerstein et al.(2012)
GM12878_NRSF_HudsonAlpha
0.827 1.000
REST
M07847_2.00
Homo sapiens
GCTGTCCRHGGTGCT

AGCACCDYGGACAGC
ChIP-seq
Gerstein et al.(2012)
H1-hESC_NRSF_HudsonAlpha
0.827 1.000
REST
M07848_2.00
Homo sapiens
HGCTGTCCRWGGTSCT

AGSACCWYGGACAGCD
ChIP-seq
Gerstein et al.(2012)
HeLa-S3_NRSF_HudsonAlpha
0.827 1.000
REST
M07849_2.00
Homo sapiens
TGTCCRHGGTGCTGA

TCAGCACCDYGGACA
ChIP-seq
Gerstein et al.(2012)
HepG2_NRSF_HudsonAlpha
0.827 1.000
REST
M07850_2.00
Homo sapiens
TGTCCVHGGTGCTGA

TCAGCACCDBGGACA
ChIP-seq
Gerstein et al.(2012)
HTB-11_NRSF_HudsonAlpha
0.827 1.000
REST
M07851_2.00
Homo sapiens
CTGTCCVHGGTGCTGA

TCAGCACCDBGGACAG
ChIP-seq
Gerstein et al.(2012)
K562_NRSF_HudsonAlpha
0.827 1.000
REST
M07852_2.00
Homo sapiens
GSHGCTGTCCRHGGTGCTGAM

KTCAGCACCDYGGACAGCDSC
ChIP-seq
Gerstein et al.(2012)
PANC-1_NRSF_HudsonAlpha
0.827 1.000
REST
M07853_2.00
Homo sapiens
CTGTCCRHGGTGCTG

CAGCACCDYGGACAG
ChIP-seq
Gerstein et al.(2012)
PFSK-1_NRSF_HudsonAlpha
0.827 1.000
REST
M07854_2.00
Homo sapiens
GSHGCTGTCCRHGGT

ACCDYGGACAGCDSC
ChIP-seq
Gerstein et al.(2012)
U87_NRSF_HudsonAlpha
0.827 1.000
REST
M08861_2.00
Homo sapiens
DGSHGCTGTCCRHGGTGCTGAH

DTCAGCACCDYGGACAGCDSCH
Misc
Kulakovskiy et al.(2013)
REST_HUMAN.H11MO.0.A
0.827 1.000
REST
M09501_2.00
Homo sapiens
GGHGCTGTCCRWGGTGCTGA

TCAGCACCWYGGACAGCDCC
Misc
Heinz et al.(2010)
Jurkat-NRSF
0.827 1.000
REST
M10116_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NRSE_B
0.827 1.000
REST
M10117_2.00
Homo sapiens
GSYKCTGTCCGYGGTGCTGAA

TTCAGCACCRCGGACAGMRSC
Transfac
Matys et al.(2006)
V$NRSF_01
0.827 1.000
REST
M10118_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$REST_01
0.827 1.000
REST
M10119_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$REST_04
0.827 1.000
REST
M10120_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$REST_05
0.827 1.000
REST
M10121_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$REST_06
0.827 1.000
REST
M10122_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$REST_10
0.827 1.000
REST
M10123_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$REST_12
0.827 1.000
REST
M10124_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$REST_Q5
0.827 1.000
Rest
M10362_2.00
Rattus norvegicus Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NRSF_Q4
0.826 0.988
Rest
M08983_2.00
Mus musculus
DGBHGCTGTCCDHGGTSCTGRH

DYCAGSACCDHGGACAGCDVCH
Misc
Kulakovskiy et al.(2013)
REST_MOUSE.H11MO.0.A
0.820 0.981
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSBTAP00000039405-D1 C2H2 ZF 215 237
ENSBTAP00000039405-D1 C2H2 ZF 247 269
ENSBTAP00000039405-D1 C2H2 ZF 275 297
ENSBTAP00000039405-D1 C2H2 ZF 303 325
ENSBTAP00000039405-D1 C2H2 ZF 331 354
ENSBTAP00000039405-D1 C2H2 ZF 360 382
ENSBTAP00000039405-D1 C2H2 ZF 388 411

Links

Other C2H2 ZF family TFs
Other Bos grunniens TFs

57 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
29738.m001041 Ricinus communis 29738.m001041 I 0.000
30167.m000856 Ricinus communis 30167.m000856 I 0.000
30174.m008721 Ricinus communis 30174.m008721 I 0.000
Aquca_002_01093 Aquilegia coerulea Aquca_002_01093 I 0.000
Aquca_026_00208 Aquilegia coerulea Aquca_026_00208 I 0.000
Bo2g055640 Brassica oleracea Bo2g055640 I 0.000
Bo2g061250 Brassica oleracea Bo2g061250 I 0.000
Bo6g099040 Brassica oleracea Bo6g099040 I 0.000
Bo6g103670 Brassica oleracea Bo6g103670 I 0.000
Bostr.26959s0002 Boechera stricta Bostr.26959s0002 I 0.000
Bostr.26959s0184 Boechera stricta Bostr.26959s0184 I 0.000
Bra004097 Brassica rapa Bra004097 I 0.000
Bra004212 Brassica rapa Bra004212 I 0.000
Bra034010 Brassica rapa Bra034010 I 0.000
Bra038350 Brassica rapa Bra038350 I 0.000
BRC2 Vitis vinifera VIT_01s0011g02920 I 0.000
BRC2 Arabidopsis thaliana AT1G68800 I 0.000
BRC2 Arabidopsis lyrata fgenesh1_pm.C_scaffold_2000933 I 0.000
Cagra.1125s0016 Capsella grandiflora Cagra.1125s0016 I 0.000
Cagra.1157s0001 Capsella grandiflora Cagra.1157s0001 I 0.000
Carubv10020487m.g Capsella rubella Carubv10020487m.g I 0.000
Carubv10020555m.g Capsella rubella Carubv10020555m.g I 0.000
cassava10552.m1 Manihot esculenta cassava10552.m1 I 0.000
cassava16230.m1 Manihot esculenta cassava16230.m1 I 0.000
cassava32886.m1 Manihot esculenta cassava32886.m1 I 0.000
cassava9378.m1 Manihot esculenta cassava9378.m1 I 0.000
chr1.LjB10L14.10.nc Lotus japonicus chr1.LjB10L14.10.nc I 0.000
chr2.LjB17A04.40.nc Lotus japonicus chr2.LjB17A04.40.nc I 0.000
chr5.CM0357.550.nc Lotus japonicus chr5.CM0357.550.nc I 0.000
Ciclev10024246m.g Citrus clementina Ciclev10024246m.g I 0.000
Ciclev10033382m.g Citrus clementina Ciclev10033382m.g I 0.000
Cla002355 Citrullus lanatus Cla002355 I 0.000
Cla016709 Citrullus lanatus Cla016709 I 0.000
Cucsa.031600 Cucumis sativus Cucsa.031600 I 0.000
Cucsa.238090 Cucumis sativus Cucsa.238090 I 0.000
Cucsa.280880 Cucumis sativus Cucsa.280880 I 0.000
Cucsa.283930 Cucumis sativus Cucsa.283930 I 0.000
Eucgr.B00699 Eucalyptus grandis Eucgr.B00699 I 0.000
Eucgr.J01466 Eucalyptus grandis Eucgr.J01466 I 0.000
evm.TU.supercontig_1401.1 Carica papaya evm.TU.supercontig_1401.1 I 0.000
evm.TU.supercontig_179.29 Carica papaya evm.TU.supercontig_179.29 I 0.000
gene03882-v1.0-hybrid Fragaria vesca gene03882-v1.0-hybrid I 0.000
GLYMA08G28691 Glycine max GLYMA08G28691 I 0.000
GLYMA10G39141 Glycine max GLYMA10G39141 I 0.000
GLYMA13G07475 Glycine max GLYMA13G07475 I 0.000
GLYMA18G51581 Glycine max GLYMA18G51581 I 0.000
GLYMA19G05921 Glycine max GLYMA19G05921 I 0.000
GLYMA20G28670 Glycine max GLYMA20G28670 I 0.000
Gorai.001G200400 Gossypium raimondii Gorai.001G200400 I 0.000
Gorai.008G186800 Gossypium raimondii Gorai.008G186800 I 0.000
Lus10021713.g Linum usitatissimum Lus10021713.g I 0.000
Lus10035055.g Linum usitatissimum Lus10035055.g I 0.000
MDP0000173048 Malus domestica MDP0000173048 I 0.000
MDP0000272980 Malus domestica MDP0000272980 I 0.000
mgf019480m Mimulus guttatus mgf019480m I 0.000
mgf022233m Mimulus guttatus mgf022233m I 0.000
mgf026636m Mimulus guttatus mgf026636m I 0.000
MTR_1g103380 Medicago truncatula MTR_1g103380 I 0.000
MTR_6g017055 Medicago truncatula MTR_6g017055 I 0.000
MTR_7g018500 Medicago truncatula MTR_7g018500 I 0.000
orange1.1g035911m.g Citrus sinensis orange1.1g035911m.g I 0.000
orange1.1g039323m.g Citrus sinensis orange1.1g039323m.g I 0.000
PGSC0003DMG400000823 Solanum tuberosum PGSC0003DMG400000823 I 0.000
PGSC0003DMG400007467 Solanum tuberosum PGSC0003DMG400007467 I 0.000
PK12240.1 Cannabis sativa PK12240.1 D 0.000
PK19717.1 Cannabis sativa PK19717.1 D 0.000
Pm015499 Prunus mume Pm015499 I 0.000
Pm029002 Prunus mume Pm029002 I 0.000
POPTR_0008s11470 Populus trichocarpa POPTR_0008s11470 I 0.000
POPTR_0010s14030 Populus trichocarpa POPTR_0010s14030 I 0.000
POPTR_0012s05660 Populus trichocarpa POPTR_0012s05660 I 0.000
POPTR_0015s03140 Populus trichocarpa POPTR_0015s03140 I 0.000
POPTR_0017s13980 Populus trichocarpa POPTR_0017s13980 I 0.000
PRUPE_ppa016240mg Prunus persica PRUPE_ppa016240mg I 0.000
PRUPE_ppa027156mg Prunus persica PRUPE_ppa027156mg I 0.000
SapurV1A.0304s0080 Salix purpurea SapurV1A.0304s0080 I 0.000
SapurV1A.0583s0060 Salix purpurea SapurV1A.0583s0060 I 0.000
SapurV1A.0682s0140 Salix purpurea SapurV1A.0682s0140 I 0.000
Solyc03g119770.2 Solanum lycopersicum Solyc03g119770.2 I 0.000
Solyc04g006980.1 Solanum lycopersicum Solyc04g006980.1 I 0.000
Solyc05g009900.1 Solanum lycopersicum Solyc05g009900.1 I 0.000
TCM_011874 Theobroma cacao TCM_011874 I 0.000
TCM_019518 Theobroma cacao TCM_019518 I 0.000
TCP1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2001059 I 0.000
TCP1 Vitis vinifera VIT_14s0083g00150 I 0.000
TCP1 Arabidopsis thaliana AT1G67260 D 0.000
Thhalv10019499m.g Eutrema salsugineum Thhalv10019499m.g I 0.000