CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ENSP00000228437-D1
(
Bos grunniens
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
ENSP00000228437-D1
T134901_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PRDM4
M02881_2.00
Homo sapiens
TTTCAAGGCCCCC
GGGGGCCTTGAAA
SELEX
Jolma et al.(2013)
PRDM4_1
0.827
1.000
PRDM4
M04421_2.00
Homo sapiens
YRRCNGTTTCAAGKCYMCCC
GGGKRGMCTTGAAACNGYYR
SELEX
Yin et al.(2017)
PRDM4_eDBD_HT-SELEX
0.827
1.000
PRDM4
M04422_2.00
Homo sapiens
YRGCRGTTTCRAGGSTTVCC
GGBAASCCTYGAAACYGCYR
SELEX
Yin et al.(2017)
PRDM4_eDBD_Methyl-HT-SELEX_1
0.827
1.000
PRDM4
M04423_2.00
Homo sapiens
YRRCRGTTTCRAGKSYNCCC
GGGNRSMCTYGAAACYGYYR
SELEX
Yin et al.(2017)
PRDM4_eDBD_Methyl-HT-SELEX_2
0.827
1.000
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSP00000228437-D1
C2H2 ZF
587
609
WKCSMCPQAFISPSKLHVHFMGH
ENSP00000228437-D1
C2H2 ZF
615
637
HKCDFCSKAFSDPSNLRTHLKIH
ENSP00000228437-D1
C2H2 ZF
643
665
YRCTLCDKSFTQKAHLESHMVIH
ENSP00000228437-D1
C2H2 ZF
671
693
LKCDYCDKLFMRRQDLKQHVLIH
ENSP00000228437-D1
C2H2 ZF
699
721
IKCPKCDKLFLRTNHLKKHLNSH
ENSP00000228437-D1
C2H2 ZF
727
748
YVCEKCTKAYLTKYHLTRHLKT
Links
Other
C2H2 ZF
family TFs
Other
Bos grunniens
TFs
53 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy