CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ENSP00000228437
(
Macaca fascicularis
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
ENSP00000228437
T134902_2.00
GigaDB (2015-Oct-22)
NCBI Gene Info:
The protein encoded by this gene is a transcription factor of the PR-domain protein family. It contains a PR-domain and multiple zinc finger motifs. Transcription factors of the PR-domain family are known to be involved in cell differentiation and tumorigenesis. An elevated expression level of this gene has been observed in PC12 cells treated with nerve growth factor, beta polypeptide (NGF). This gene is located in a chromosomal region that is thought to contain tumor suppressor genes. [provided by RefSeq, Jul 2008]
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PRDM4
M02881_2.00
Homo sapiens
TTTCAAGGCCCCC
GGGGGCCTTGAAA
SELEX
Jolma et al.(2013)
PRDM4_1
0.827
1.000
PRDM4
M04421_2.00
Homo sapiens
YRRCNGTTTCAAGKCYMCCC
GGGKRGMCTTGAAACNGYYR
SELEX
Yin et al.(2017)
PRDM4_eDBD_HT-SELEX
0.827
1.000
PRDM4
M04422_2.00
Homo sapiens
YRGCRGTTTCRAGGSTTVCC
GGBAASCCTYGAAACYGCYR
SELEX
Yin et al.(2017)
PRDM4_eDBD_Methyl-HT-SELEX_1
0.827
1.000
PRDM4
M04423_2.00
Homo sapiens
YRRCRGTTTCRAGKSYNCCC
GGGNRSMCTYGAAACYGYYR
SELEX
Yin et al.(2017)
PRDM4_eDBD_Methyl-HT-SELEX_2
0.827
1.000
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSP00000228437
C2H2 ZF
587
609
WKCSMCPQAFISPSKLHVHFMGH
ENSP00000228437
C2H2 ZF
615
637
HKCDFCSKAFSDPSNLRTHLKIH
ENSP00000228437
C2H2 ZF
643
665
YRCTLCDKSFTQKAHLESHMVIH
ENSP00000228437
C2H2 ZF
671
693
LKCDYCDKLFMRRQDLKQHVLIH
ENSP00000228437
C2H2 ZF
699
721
IKCPKCDKLFLRTNHLKKHLNSH
ENSP00000228437
C2H2 ZF
727
748
YVCEKCTKAYLTKYHLTRHLKT
Links
Other
C2H2 ZF
family TFs
Other
Macaca fascicularis
TFs
53 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy