CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
ENSP00000366527-D1
(
Bos grunniens
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
ENSP00000366527-D1
T135344_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ZSCAN16
M02924_2.00
Homo sapiens
MRTGTTAACAGAACACCY
RGGTGTTCTGTTAACAYK
SELEX
Jolma et al.(2013)
ZNF435_1
0.824
0.978
ZSCAN16
M04623_2.00
Homo sapiens
HGAGGCTCTGTTAACAHTB
VADTGTTAACAGAGCCTCD
SELEX
Yin et al.(2017)
ZSCAN16_eDBD_HT-SELEX
0.824
0.978
ZSCAN16
M04625_2.00
Homo sapiens
NGAGGCTCTGTTAACANYN
NRNTGTTAACAGAGCCTCN
SELEX
Yin et al.(2017)
ZSCAN16_FL_HT-SELEX
0.824
0.978
ZSCAN16
M08377_2.00
Homo sapiens
RTRTRTRTATRTRTRTRTATATRT
AYATATAYAYAYAYATAYAYAYAY
ChIP-seq
Schmitges et al.(2016)
Q9H4T2.MEME
0.824
0.978
ZSCAN16
M04624_2.00
Homo sapiens
HGAGGCTCTGTTAACAHTB
VADTGTTAACAGAGCCTCD
SELEX
Yin et al.(2017)
ZSCAN16_eDBD_Methyl-HT-SELEX
0.824
0.978
ZSCAN16
M04626_2.00
Homo sapiens
NGAGGCTCTGTTAACAHTN
NADTGTTAACAGAGCCTCN
SELEX
Yin et al.(2017)
ZSCAN16_FL_Methyl-HT-SELEX
0.824
0.978
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSP00000366527-D1
C2H2 ZF
236
258
YKCDDCGKSFSHSSDLSKHRRTH
ENSP00000366527-D1
C2H2 ZF
264
286
YKCDECGKSFIQRSHLIGHHRVH
ENSP00000366527-D1
C2H2 ZF
292
314
YKCKECGKDFSGRTGLIQHQRIH
ENSP00000366527-D1
C2H2 ZF
320
342
YECDECGRPFRVSSALIRHQRIH
Links
Other
C2H2 ZF
family TFs
Other
Bos grunniens
TFs
24 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy