|
ENSP00000402040-D1
(Bos grunniens)
C2H2 ZF
|
TF Information |
Pfam ID |
Interpro ID |
Gene ID |
CIS-BP ID |
Sequence source |
PF00096 (zf-C2H2) |
IPR007087 |
ENSP00000402040-D1 |
T135539_2.00 |
GigaDB (2015-Oct-22) |
NCBI Gene Info:This gene encodes a tumor suppressor protein containing transcriptional activation, DNA binding, and oligomerization domains. The encoded protein responds to diverse cellular stresses to regulate expression of target genes, thereby inducing cell cycle arrest, apoptosis, senescence, DNA repair, or changes in metabolism. Mutations in this gene are associated with a variety of human cancers, including hereditary cancers such as Li-Fraumeni syndrome. Alternative splicing of this gene and the use of alternate promoters result in multiple transcript variants and isoforms. Additional isoforms have also been shown to result from the use of alternate translation initiation codons from identical transcript variants (PMIDs: 12032546, 20937277). [provided by RefSeq, Dec 2016] |
Directly determined binding motifs |
Name/Motif ID |
Species |
Forward |
Reverse |
Type/Study/Study ID |
SR Score |
DBD Identity |
No direct experiments |
|
|
|
|
|
Motifs from related TFs |
Name/Motif ID |
Species |
Forward |
Reverse |
Type/Study/Study ID |
SR Score |
DBD Identity |
EGR2
M00233_2.00 |
Homo sapiens |
HDCCCMCDBN |
NVHGKGGGHD |
PBM
Barrera et al.(2016)
EGR2_REF
|
0.827
|
1.000
|
Egr2
M00778_2.00 |
Mus musculus |
YRCCCMCGYN |
NRCGKGGGYR |
PBM
Weirauch et al.(2013)
pTH3091
|
0.827
|
1.000
|
EGR2
M02885_2.00 |
Homo sapiens |
MCGCCCACGCD |
HGCGTGGGCGK |
SELEX
Jolma et al.(2013)
EGR2_1
|
0.827
|
1.000
|
EGR2
M02886_2.00 |
Homo sapiens |
NNMCGCCCACGCDNN |
NNHGCGTGGGCGKNN |
SELEX
Jolma et al.(2013)
EGR2_2
|
0.827
|
1.000
|
EGR2
M04439_2.00 |
Homo sapiens |
HMCRCCCACGCNN |
NNGCGTGGGYGKD |
SELEX
Yin et al.(2017)
EGR2_FL_HT-SELEX
|
0.827
|
1.000
|
EGR2
M08302_2.00 |
Homo sapiens |
CDCCCMCDC |
GHGKGGGHG |
ChIP-seq
Schmitges et al.(2016)
P11161_1-3.RCADE
|
0.827
|
1.000
|
EGR2
M08884_2.00 |
Homo sapiens |
YYCCDCCCMCDCHYHYHY |
RDRDRDGHGKGGGHGGRR |
Misc
Kulakovskiy et al.(2013)
EGR2_HUMAN.H11MO.0.A
|
0.827
|
1.000
|
Egr2
M08994_2.00 |
Mus musculus |
BHYCCDCCCMCDCN |
NGHGKGGGHGGRDV |
Misc
Kulakovskiy et al.(2013)
EGR2_MOUSE.H11MO.0.A
|
0.827
|
1.000
|
Egr2
M09515_2.00 |
Mus musculus |
NMCRCCCACDSN |
NSHGTGGGYGKN |
Misc
Heinz et al.(2010)
Thymocytes-Egr2_GSE34254
|
0.827
|
1.000
|
EGR2
M10197_2.00 |
Homo sapiens |
MCGCCYACGCAH |
DTGCGTRGGCGK |
Transfac
Matys et al.(2006)
V$EGR2_01
|
0.827
|
1.000
|
EGR2
M10198_2.00 |
Homo sapiens |
Transfac license required
|
Transfac license required
|
Transfac
Matys et al.(2006)
V$EGR2_Q4
|
0.827
|
1.000
|
EGR2
M10199_2.00 |
Homo sapiens |
Transfac license required
|
Transfac license required
|
Transfac
Matys et al.(2006)
V$EGR2_Q6
|
0.827
|
1.000
|
EGR2
M04440_2.00 |
Homo sapiens |
NMCGCCCACRCRN |
NYGYGTGGGCGKN |
SELEX
Yin et al.(2017)
EGR2_FL_Methyl-HT-SELEX
|
0.827
|
1.000
|
EGR2
M00232_2.00 |
Homo sapiens |
NHMCGCCYNN |
NNRGGCGKDN |
PBM
Barrera et al.(2016)
EGR2_R409W
|
0.826
|
0.986
|
Egr3
M00776_2.00 |
Mus musculus |
HHDCCCMCDN |
NHGKGGGHDD |
PBM
Weirauch et al.(2013)
pTH2820
|
0.804
|
0.899
|
EGR3
M02915_2.00 |
Homo sapiens |
NHMCGCCCMCGCAHN |
NDTGCGKGGGCGKDN |
SELEX
Jolma et al.(2013)
EGR3_1
|
0.804
|
0.899
|
Egr3
M02931_2.00 |
Mus musculus |
HMCGCCCACGCAHWN |
NWDTGCGTGGGCGKD |
SELEX
Jolma et al.(2013)
Egr3_1
|
0.804
|
0.899
|
EGR3
M04583_2.00 |
Homo sapiens |
HMCGCCCACGCRH |
DYGCGTGGGCGKD |
SELEX
Yin et al.(2017)
EGR3_FL_HT-SELEX
|
0.804
|
0.899
|
EGR3
M08349_2.00 |
Homo sapiens |
CDCCYCCDC |
GHGGRGGHG |
ChIP-seq
Schmitges et al.(2016)
Q06889_1-3.RCADE
|
0.804
|
0.899
|
EGR3
M10279_2.00 |
Homo sapiens |
MCGCCYACGCWN |
NWGCGTRGGCGK |
Transfac
Matys et al.(2006)
V$EGR3_01
|
0.804
|
0.899
|
EGR3
M10280_2.00 |
Homo sapiens |
Transfac license required
|
Transfac license required
|
Transfac
Matys et al.(2006)
V$EGR3_Q3
|
0.804
|
0.899
|
EGR3
M10281_2.00 |
Homo sapiens |
Transfac license required
|
Transfac license required
|
Transfac
Matys et al.(2006)
V$EGR3_Q6
|
0.804
|
0.899
|
EGR3
M04584_2.00 |
Homo sapiens |
NMCGCCCACGCRH |
DYGCGTGGGCGKN |
SELEX
Yin et al.(2017)
EGR3_FL_Methyl-HT-SELEX
|
0.804
|
0.899
|
Egr1
M01864_2.00 |
Mus musculus |
CCCMCGYNN |
NNRCGKGGG |
PBM
Weirauch et al.(2014)
pTH5337
|
0.803
|
0.957
|
Egr1
M00375_2.00 |
Mus musculus |
NCCYMCDNN |
NNHGKRGGN |
PBM
Berger et al.(2006)
Zif268
|
0.803
|
0.957
|
EGR1
M02883_2.00 |
Homo sapiens |
NMCGCCCMCGCANN |
NNTGCGKGGGCGKN |
SELEX
Jolma et al.(2013)
EGR1_1
|
0.803
|
0.957
|
EGR1
M02884_2.00 |
Homo sapiens |
HMCGCCCACGCAHW |
WDTGCGTGGGCGKD |
SELEX
Jolma et al.(2013)
EGR1_2
|
0.803
|
0.957
|
Egr1
M02932_2.00 |
Mus musculus |
HHMCGCCCMCBCAHHH |
DDDTGVGKGGGCGKDD |
SELEX
Jolma et al.(2013)
Egr1_1
|
0.803
|
0.957
|
EGR1
M04437_2.00 |
Homo sapiens |
NNCRCCCMCRCNN |
NNGYGKGGGYGNN |
SELEX
Yin et al.(2017)
EGR1_eDBD_HT-SELEX
|
0.803
|
0.957
|
Egr1
M05860_2.00 |
Mus musculus |
NNMCRCCCMCGCN |
NGCGKGGGYGKNN |
SMiLE-seq
Isakova et al.(2017)
EGR1
|
0.803
|
0.957
|
EGR1
M07927_2.00 |
Homo sapiens |
NVBNNNNBCCGCCCMCGCNB |
VNGCGKGGGCGGVNNNNVBN |
ChIP-seq
Gerstein et al.(2012)
GM12878_EGR1_HudsonAlpha
|
0.803
|
0.957
|
EGR1
M07928_2.00 |
Homo sapiens |
BNCCGCCCMCGCNBB |
VVNGCGKGGGCGGNV |
ChIP-seq
Gerstein et al.(2012)
H1-hESC_EGR1_HudsonAlpha
|
0.803
|
0.957
|
EGR1
M07929_2.00 |
Homo sapiens |
NNNNNNBNNCCRCCCMCGCN |
NGCGKGGGYGGNNVNNNNNN |
ChIP-seq
Gerstein et al.(2012)
K562_EGR1_HudsonAlpha
|
0.803
|
0.957
|
EGR1
M08882_2.00 |
Homo sapiens |
BHNCCDCCCMCDCHBNB |
VNVDGHGKGGGHGGNDV |
Misc
Kulakovskiy et al.(2013)
EGR1_HUMAN.H11MO.0.A
|
0.803
|
0.957
|
Egr1
M08996_2.00 |
Mus musculus |
YYCCRCCCMCGCNB |
VNGCGKGGGYGGRR |
Misc
Kulakovskiy et al.(2013)
EGR1_MOUSE.H11MO.0.A
|
0.803
|
0.957
|
EGR1
M09506_2.00 |
Homo sapiens |
CRCCCMCRCA |
TGYGKGGGYG |
Misc
Heinz et al.(2010)
K562-Egr1_GSE32465
|
0.803
|
0.957
|
EGR1
M10188_2.00 |
Homo sapiens |
MCGCCYACGCAW |
WTGCGTRGGCGK |
Transfac
Matys et al.(2006)
V$EGR1_01
|
0.803
|
0.957
|
EGR1
M10189_2.00 |
Homo sapiens |
Transfac license required
|
Transfac license required
|
Transfac
Matys et al.(2006)
V$EGR1_02
|
0.803
|
0.957
|
EGR1
M10190_2.00 |
Homo sapiens |
Transfac license required
|
Transfac license required
|
Transfac
Matys et al.(2006)
V$EGR1_09
|
0.803
|
0.957
|
EGR1
M10191_2.00 |
Homo sapiens |
Transfac license required
|
Transfac license required
|
Transfac
Matys et al.(2006)
V$EGR1_11
|
0.803
|
0.957
|
EGR1
M10192_2.00 |
Homo sapiens |
Transfac license required
|
Transfac license required
|
Transfac
Matys et al.(2006)
V$EGR1_12
|
0.803
|
0.957
|
EGR1
M10193_2.00 |
Homo sapiens |
Transfac license required
|
Transfac license required
|
Transfac
Matys et al.(2006)
V$EGR1_13
|
0.803
|
0.957
|
EGR1
M10194_2.00 |
Homo sapiens |
Transfac license required
|
Transfac license required
|
Transfac
Matys et al.(2006)
V$EGR1_15
|
0.803
|
0.957
|
EGR1
M10195_2.00 |
Homo sapiens |
Transfac license required
|
Transfac license required
|
Transfac
Matys et al.(2006)
V$EGR1_Q3
|
0.803
|
0.957
|
EGR1
M10196_2.00 |
Homo sapiens |
Transfac license required
|
Transfac license required
|
Transfac
Matys et al.(2006)
V$EGR1_Q6
|
0.803
|
0.957
|
EGR1
M04438_2.00 |
Homo sapiens |
NHCDCCCMCNYNN |
NNRNGKGGGHGDN |
SELEX
Yin et al.(2017)
EGR1_eDBD_Methyl-HT-SELEX
|
0.803
|
0.957
|
egrh-1
M00622_2.00 |
Caenorhabditis elegans |
CSCCCMCR |
YGKGGGSG |
PBM
Narasimhan et al.(2015)
pTH9317
|
0.785
|
0.899
|
EGR4
M02889_2.00 |
Homo sapiens |
NHMCGCCCACGCAHHN |
NDDTGCGTGGGCGKDN |
SELEX
Jolma et al.(2013)
EGR4_1
|
0.784
|
0.783
|
EGR4
M02890_2.00 |
Homo sapiens |
NHMCGCCCACGCAHWH |
DWDTGCGTGGGCGKDN |
SELEX
Jolma et al.(2013)
EGR4_2
|
0.784
|
0.783
|
EGR4
M04461_2.00 |
Homo sapiens |
HMCGCCCACGCAH |
DTGCGTGGGCGKD |
SELEX
Yin et al.(2017)
EGR4_eDBD_HT-SELEX
|
0.784
|
0.783
|
EGR4
M10216_2.00 |
Homo sapiens |
MCRCCCACGCAW |
WTGCGTGGGYGK |
Transfac
Matys et al.(2006)
V$NGFIC_01
|
0.784
|
0.783
|
EGR4
M04462_2.00 |
Homo sapiens |
HMCGCCCMCGCRH |
DYGCGKGGGCGKD |
SELEX
Yin et al.(2017)
EGR4_eDBD_Methyl-HT-SELEX
|
0.784
|
0.783
|
EGR2
M00231_2.00 |
Homo sapiens |
MCCMCGCD |
HGCGKGGK |
PBM
Barrera et al.(2016)
EGR2_R359W
|
0.781
|
0.986
|
sr
M06072_2.00 |
Drosophila melanogaster |
HVMCGCCCMCVYMH |
DKRBGKGGGCGKBD |
B1H
Zhu et al.(2011)
sr_SANGER_5_FBgn0003499
|
0.781
|
0.884
|
sr
M06073_2.00 |
Drosophila melanogaster |
NNMCRCCCMCVHNN |
NNDBGKGGGYGKNN |
B1H
Zhu et al.(2011)
sr_SOLEXA_5_FBgn0003499
|
0.781
|
0.884
|
For this family, TFs with SR scores > 0.755 will likely have a similar motif |