Gfo_R000535 (Geospiza fortis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Gfo_R000535 T135647_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ZNF276
M04495_2.00
Homo sapiens
NWAAGGWSGWVDMKACNHCCTTWAN

NTWAAGGDNGTMKHBWCSWCCTTWN
SELEX
Yin et al.(2017)
ZNF276_eDBD_HT-SELEX
0.816 0.974
ZNF276
M04496_2.00
Homo sapiens
STTAAGGBSGWVWATACYHCCTTAMN

NKTAAGGDRGTATWBWCSVCCTTAAS
SELEX
Yin et al.(2017)
ZNF276_eDBD_Methyl-HT-SELEX
0.816 0.974
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gfo_R000535 C2H2 ZF 341 366
Gfo_R000535 C2H2 ZF 373 397
Gfo_R000535 C2H2 ZF 403 425
Gfo_R000535 C2H2 ZF 431 453
Gfo_R000535 C2H2 ZF 461 484

Links

Other C2H2 ZF family TFs
Other Geospiza fortis TFs

Invalid Input OrderBy

67 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action