Gfo_R001683 (Geospiza fortis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Gfo_R001683 T135664_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Mtf1
M00136_2.00 		Mus musculus
CGTGYGCAM
KTGCRCACG		 PBM
Badis et al.(2009)
Mtf1_2377 		0.809 0.978
MTF1
M02922_2.00 		Homo sapiens
GTGCCGTGTGCAAA
TTTGCACACGGCAC		 SELEX
Jolma et al.(2013)
MTF1_1 		0.809 0.978
MTF1
M04617_2.00 		Homo sapiens
NDNDYCGTGTGCAAARN
NYTTTGCACACGRHNHN		 SELEX
Yin et al.(2017)
MTF1_eDBD_HT-SELEX 		0.809 0.978
MTF1
M08942_2.00 		Homo sapiens
MGKVHCGTGYGCADMDB
VHKHTGCRCACGDBMCK		 Misc
Kulakovskiy et al.(2013)
MTF1_HUMAN.H11MO.0.C 		0.809 0.978
Mtf1
M08981_2.00 		Mus musculus
MGKVHCGTGYGCADMDB
VHKHTGCRCACGDBMCK		 Misc
Kulakovskiy et al.(2013)
MTF1_MOUSE.H11MO.0.C 		0.809 0.978
MTF1
M10308_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$MTF1_01 		0.809 0.978
MTF1
M10309_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$MTF1_02 		0.809 0.978
MTF1
M10310_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$MTF1_Q4 		0.809 0.978
MTF1
M10311_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$MTF1_Q5 		0.809 0.978
MTF1
M04618_2.00 		Homo sapiens
NRNRCCGTGTGCAAARV
BYTTTGCACACGGYNYN		 SELEX
Yin et al.(2017)
MTF1_eDBD_Methyl-HT-SELEX 		0.809 0.978
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gfo_R001683 C2H2 ZF 140 164
Gfo_R001683 C2H2 ZF 170 194
Gfo_R001683 C2H2 ZF 200 224
Gfo_R001683 C2H2 ZF 229 253
Gfo_R001683 C2H2 ZF 259 283
Gfo_R001683 C2H2 ZF 289 313

Links

Other C2H2 ZF family TFs
Other Geospiza fortis TFs

64 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MTF1 Taeniopygia guttata ENSTGUG00000001500 I 0.827
ENSFALG00000000973 Ficedula albicollis ENSFALG00000000973 I 0.827
MTF1 Gallus gallus ENSGALG00000001639 I 0.827
MTF1 Meleagris gallopavo ENSMGAG00000003052 I 0.827
Brh_R010359 Buceros rhinoceros Brh_R010359 I 0.827
Tal_R009432 Tyto alba Tal_R009432 I 0.827
ENSAPLG00000016056 Anas platyrhynchos ENSAPLG00000016056 I 0.827
Aan_R005906 Calypte anna Aan_R005906 I 0.827
Afo_R013895 Aptenodytes forsteri Afo_R013895 I 0.827
Ogr09934 Ophisaurus gracilis Ogr09934 I 0.816
Cmyd_10015325 Chelonia mydas Cmyd_10015325 I 0.816
MTF1 Monodelphis domestica ENSMODG00000017745 I 0.816
MTF1 Anolis carolinensis ENSACAG00000017181 I 0.816
Pvit_17763 Pogona vitticeps Pvit_17763 I 0.816
ENSSHAG00000014007 Sarcophilus harrisii ENSSHAG00000014007 I 0.816
ENSPSIG00000005687 Pelodiscus sinensis ENSPSIG00000005687 I 0.814
ENSLOCG00000003310 Lepisosteus oculatus ENSLOCG00000003310 I 0.813
MTF1 Ornithorhynchus anatinus ENSOANG00000002047 I 0.812
ENSAMXG00000001644 Astyanax mexicanus ENSAMXG00000001644 I 0.810
ENSP00000362127 Macaca fascicularis ENSP00000362127 I 0.809
ENSPANG00000016211 Papio anubis ENSPANG00000016211 I 0.809
Myotis_brandtii_MTF1_10028927 Myotis brandtii Myotis_brandtii_MTF1_10028927 I 0.809
MTF1 Tursiops truncatus ENSTTRG00000013535 I 0.809
ENSPPYG00000001521 Pongo abelii ENSPPYG00000001521 I 0.809
MTF1 Pan troglodytes ENSPTRG00000022932 I 0.809
ENSSTOG00000025276 Ictidomys tridecemlineatus ENSSTOG00000025276 I 0.809
Mtf1 Rattus norvegicus ENSRNOG00000025724 I 0.809
ENSBTAP00000008535-D1 Bos grunniens ENSBTAP00000008535-D1 I 0.809
MTF1 Pteropus vampyrus ENSPVAG00000010152 I 0.809
LOC100909856 Rattus norvegicus ENSRNOG00000050240 I 0.809
ENSTSYG00000005589 Tarsius syrichta ENSTSYG00000005589 I 0.809
ENSMPUG00000014538 Mustela putorius furo ENSMPUG00000014538 I 0.809
ENSCSAG00000001118 Chlorocebus sabaeus ENSCSAG00000001118 I 0.809
MTF1 Dasypus novemcinctus ENSDNOG00000009118 I 0.809
MTF1 Equus caballus ENSECAG00000017235 I 0.809
MTF1 Echinops telfairi ENSETEG00000003045 I 0.809
MTF1 Cavia porcellus ENSCPOG00000014657 I 0.809
MTF1 Callithrix jacchus ENSCJAG00000002097 I 0.809
ENSAMEG00000001186 Ailuropoda melanoleuca ENSAMEG00000001186 I 0.809
MTF1 Bos taurus ENSBTAG00000006511 I 0.809
MTF1 Canis familiaris ENSCAFG00000003247 I 0.809
MTF1 Felis catus ENSFCAG00000011020 I 0.809
MTF1 Homo sapiens ENSG00000188786 D 0.809
Mtf1 Mus musculus ENSMUSG00000028890 D 0.809
ENSNLEG00000011682 Nomascus leucogenys ENSNLEG00000011682 I 0.809
ENSOARG00000019896 Ovis aries ENSOARG00000019896 I 0.809
MTF1 Oryctolagus cuniculus ENSOCUG00000005389 I 0.809
MTF1 Macaca mulatta ENSMMUG00000023275 I 0.809
MTF1 Gorilla gorilla ENSGGOG00000007624 I 0.809
MTF1 Microcebus murinus ENSMICG00000011969 I 0.809
MTF1 Myotis lucifugus ENSMLUG00000000963 I 0.809
Alligator_sinensis_CCG001426.1 Alligator sinensis Alligator_sinensis_CCG001426.1 I 0.807
MTF1 Otolemur garnettii ENSOGAG00000000872 I 0.807
MTF1 Oryzias latipes ENSORLG00000014411 I 0.804
mtf1 Xenopus tropicalis XB-GENE-979128 I 0.804
ENSPFOG00000013962 Poecilia formosa ENSPFOG00000013962 I 0.804
mtf1.L Xenopus laevis XB-GENE-979131 I 0.804
ENSXMAG00000014614 Xiphophorus maculatus ENSXMAG00000014614 I 0.804
MTF1 Gasterosteus aculeatus ENSGACG00000013875 I 0.802
ENSONIG00000016218 Oreochromis niloticus ENSONIG00000016218 I 0.802
ENSGMOG00000015592 Gadus morhua ENSGMOG00000015592 I 0.800
Sakowv30031703m.g Saccoglossus kowalevskii Sakowv30031703m.g I 0.768
tetur01g09970 Tetranychus urticae tetur01g09970 I 0.763
MTF1 Takifugu rubripes ENSTRUG00000005297 I 0.756