Gfo_R002632 (Geospiza fortis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Gfo_R002632 T135681_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZBTB48
M08391_2.00 		Homo sapiens
HHDNTCCCTDR
YHAGGGANHDD		 ChIP-seq
Schmitges et al.(2016)
P10074.MEME 		0.809 0.952
ZBTB48
M08956_2.00 		Homo sapiens
BHBRVTCCCTDR
YHAGGGABYVDV		 Misc
Kulakovskiy et al.(2013)
ZBT48_HUMAN.H11MO.0.C 		0.809 0.952
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gfo_R002632 C2H2 ZF 40 62
Gfo_R002632 C2H2 ZF 68 89
Gfo_R002632 C2H2 ZF 99 121
Gfo_R002632 C2H2 ZF 127 150
Gfo_R002632 C2H2 ZF 185 208
Gfo_R002632 C2H2 ZF 214 236
Gfo_R002632 C2H2 ZF 242 264
Gfo_R002632 C2H2 ZF 270 293
Gfo_R002632 C2H2 ZF 299 321
Gfo_R002632 C2H2 ZF 327 349

Links

Other C2H2 ZF family TFs
Other Geospiza fortis TFs

39 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSFALG00000009796 Ficedula albicollis ENSFALG00000009796 I 0.826
Aan_R005980 Calypte anna Aan_R005980 I 0.824
ENSMGAG00000001275 Meleagris gallopavo ENSMGAG00000001275 I 0.824
ENSPSIG00000004516 Pelodiscus sinensis ENSPSIG00000004516 I 0.824
Alligator_sinensis_CCG010682.1 Alligator sinensis Alligator_sinensis_CCG010682.1 I 0.823
Cmyd_10005145 Chelonia mydas Cmyd_10005145 I 0.823
Zbtb48 Mus musculus ENSMUSG00000028952 I 0.823
Pvit_11906 Pogona vitticeps Pvit_11906 I 0.814
ZBTB48 Gallus gallus ENSGALG00000000637 I 0.810
ZBTB48 Echinops telfairi ENSETEG00000016655 I 0.809
ENSP00000366902 Macaca fascicularis ENSP00000366902 I 0.809
ENSNLEG00000008569 Nomascus leucogenys ENSNLEG00000008569 I 0.809
ENSPANG00000021173 Papio anubis ENSPANG00000021173 I 0.809
ENSPPYG00000001938 Pongo abelii ENSPPYG00000001938 I 0.809
Zbtb48 Rattus norvegicus ENSRNOG00000009595 I 0.809
ZBTB48 Pan troglodytes ENSPTRG00000030844 I 0.809
ZBTB48 Bos taurus ENSBTAG00000016735 I 0.809
ZBTB48 Cavia porcellus ENSCPOG00000009998 I 0.809
ZBTB48 Macaca mulatta ENSMMUG00000032281 I 0.809
ZBTB48 Loxodonta africana ENSLAFG00000005854 I 0.809
ZBTB48 Gorilla gorilla ENSGGOG00000006819 I 0.809
ENSCSAG00000000746 Chlorocebus sabaeus ENSCSAG00000000746 I 0.809
ENSMEUG00000005297 Macropus eugenii ENSMEUG00000005297 I 0.809
ZBTB48 Equus caballus ENSECAG00000010788 I 0.809
ZBTB48 Microcebus murinus ENSMICG00000016317 I 0.809
ZBTB48 Homo sapiens ENSG00000204859 D 0.809
ENSSTOG00000026188 Ictidomys tridecemlineatus ENSSTOG00000026188 I 0.808
ZBTB48 Sus scrofa ENSSSCG00000003383 I 0.805
ZBTB48 Taeniopygia guttata ENSTGUG00000002589 I 0.805
ENSAMEG00000009650 Ailuropoda melanoleuca ENSAMEG00000009650 I 0.805
ENSBTAP00000022249-D1 Bos grunniens ENSBTAP00000022249-D1 I 0.805
ENSMPUG00000006774 Mustela putorius furo ENSMPUG00000006774 I 0.805
ZBTB48 Felis catus ENSFCAG00000000660 I 0.804
ZBTB48 Ornithorhynchus anatinus ENSOANG00000012292 I 0.796
ZBTB48 Ochotona princeps ENSOPRG00000012169 I 0.794
Myotis_brandtii_ZBTB48_10024038 Myotis brandtii Myotis_brandtii_ZBTB48_10024038 I 0.794
ZBTB48 Otolemur garnettii ENSOGAG00000001520 I 0.791
Zbtb48 Dipodomys ordii ENSDORG00000009677 I 0.786
ZBTB48 Dasypus novemcinctus ENSDNOG00000004094 I 0.784