CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Gfo_R002632
(
Geospiza fortis
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
Gfo_R002632
T135681_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ZBTB48
M08391_2.00
Homo sapiens
HHDNTCCCTDR
YHAGGGANHDD
ChIP-seq
Schmitges et al.(2016)
P10074.MEME
0.809
0.952
ZBTB48
M08956_2.00
Homo sapiens
BHBRVTCCCTDR
YHAGGGABYVDV
Misc
Kulakovskiy et al.(2013)
ZBT48_HUMAN.H11MO.0.C
0.809
0.952
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Gfo_R002632
C2H2 ZF
40
62
VECPTCHKTFLSKYYLKVHNRKH
Gfo_R002632
C2H2 ZF
68
89
FECSKCGKCYFRKENLLEHEAR
Gfo_R002632
C2H2 ZF
99
121
FTCSACPEVFKRRMELRLHMVSH
Gfo_R002632
C2H2 ZF
127
150
YKCSSCSQQFMQKKDLQSHMIKLH
Gfo_R002632
C2H2 ZF
185
208
FVCEECGHRASSRNGLQMHIKAKH
Gfo_R002632
C2H2 ZF
214
236
YVCEFCHHAFTQKANLNMHLRTH
Gfo_R002632
C2H2 ZF
242
264
FQCHLCGKTFRTQASLDKHNRTH
Gfo_R002632
C2H2 ZF
270
293
FSCEFCEQRFTEKGPLLRHVASRH
Gfo_R002632
C2H2 ZF
299
321
HFCHICGKTFKAVEQLRVHVRRH
Gfo_R002632
C2H2 ZF
327
349
FECIECGYKFTRQAHLRRHMEIH
Links
Other
C2H2 ZF
family TFs
Other
Geospiza fortis
TFs
39 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy