Gfo_R004393 (Geospiza fortis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Gfo_R004393 T135707_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Zfp740
M00784_2.00
Mus musculus
MCCCCCCNHN

NDNGGGGGGK
PBM
Weirauch et al.(2013)
pTH2857
0.820 0.926
Zfp740
M00143_2.00
Mus musculus
HMCCCCCNNN

NNNGGGGGKD
PBM
Badis et al.(2009)
Zfp740_0925
0.820 0.926
Zfp740
M02935_2.00
Mus musculus
NCCCCCCCAH

DTGGGGGGGN
SELEX
Jolma et al.(2013)
Zfp740_1
0.820 0.926
ZNF740
M02891_2.00
Homo sapiens
VCCCCCCCMY

RKGGGGGGGB
SELEX
Jolma et al.(2013)
ZNF740_1
0.804 0.926
ZNF740
M02892_2.00
Homo sapiens
VCCCCCCCAY

RTGGGGGGGB
SELEX
Jolma et al.(2013)
ZNF740_2
0.804 0.926
ZNF740
M04467_2.00
Homo sapiens
NYVCCCCCCCCAC

GTGGGGGGGGBRN
SELEX
Yin et al.(2017)
ZNF740_eDBD_HT-SELEX
0.804 0.926
ZNF740
M04469_2.00
Homo sapiens
NYNCCCCCCCCAC

GTGGGGGGGGNRN
SELEX
Yin et al.(2017)
ZNF740_FL_HT-SELEX
0.804 0.926
ZNF740
M10221_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$ZNF740_02
0.804 0.926
ZNF740
M04468_2.00
Homo sapiens
YYDCCCCCCCCAY

RTGGGGGGGGHRR
SELEX
Yin et al.(2017)
ZNF740_eDBD_Methyl-HT-SELEX
0.804 0.926
ZNF740
M04470_2.00
Homo sapiens
NYVCCCCCCCCAC

GTGGGGGGGGBRN
SELEX
Yin et al.(2017)
ZNF740_FL_Methyl-HT-SELEX
0.804 0.926
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gfo_R004393 C2H2 ZF 16 38
Gfo_R004393 C2H2 ZF 44 66
Gfo_R004393 C2H2 ZF 72 93

Links

Other C2H2 ZF family TFs
Other Geospiza fortis TFs

56 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Zfp740 Mus musculus ENSMUSG00000046897 D 0.820
ZNF740 Homo sapiens ENSG00000139651 D 0.804
ZNF740 Sorex araneus ENSSARG00000012946 I 0.804
Znf740 Rattus norvegicus ENSRNOG00000012192 I 0.820
ZNF740 Pan troglodytes ENSPTRG00000005005 I 0.804
ENSPSIG00000003019 Pelodiscus sinensis ENSPSIG00000003019 I 0.820
ENSPPYG00000004570 Pongo abelii ENSPPYG00000004570 I 0.804
ENSPFOG00000001757 Poecilia formosa ENSPFOG00000001757 I 0.765
ENSPANG00000018242 Papio anubis ENSPANG00000018242 I 0.804
ZNF740 Otolemur garnettii ENSOGAG00000025330 I 0.804
ZNF740 Oryctolagus cuniculus ENSOCUG00000001422 I 0.804
ENSNLEG00000017717 Nomascus leucogenys ENSNLEG00000017717 I 0.804
ENSSHAG00000000623 Sarcophilus harrisii ENSSHAG00000000623 I 0.816
ENSSSCG00000000256 Sus scrofa ENSSSCG00000000256 I 0.804
znf740 Xenopus tropicalis XB-GENE-1219010 I 0.804
Myotis_brandtii_ZNF740_10023006 Myotis brandtii Myotis_brandtii_ZNF740_10023006 I 0.804
ENSMMUP00000006945 Macaca fascicularis ENSMMUP00000006945 I 0.804
ENSBTAP00000048192-D3 Bos grunniens ENSBTAP00000048192-D3 I 0.804
ENSBTAP00000021935-D1 Bos grunniens ENSBTAP00000021935-D1 I 0.804
Cmyd_10004697 Chelonia mydas Cmyd_10004697 I 0.820
Alligator_sinensis_CCG005405.1 Alligator sinensis Alligator_sinensis_CCG005405.1 I 0.820
ZNF740 Tursiops truncatus ENSTTRG00000002776 I 0.804
ENSTSYG00000010942 Tarsius syrichta ENSTSYG00000010942 I 0.804
ZNF740 Tupaia belangeri ENSTBEG00000015437 I 0.820
ENSSTOG00000011188 Ictidomys tridecemlineatus ENSSTOG00000011188 I 0.820
znf740.S Xenopus laevis XB-GENE-1219015 I 0.804
ZNF740 Macaca mulatta ENSMMUG00000005246 I 0.804
ENSDORG00000002972 Dipodomys ordii ENSDORG00000002972 I 0.820
ZNF740 Dasypus novemcinctus ENSDNOG00000033888 I 0.820
znf740b Danio rerio ENSDARG00000061174 I 0.771
ENSCSAG00000005533 Chlorocebus sabaeus ENSCSAG00000005533 I 0.781
ENSCPOG00000014815 Cavia porcellus ENSCPOG00000014815 I 0.820
ZNF740 Callithrix jacchus ENSCJAG00000018381 I 0.804
ZNF740 Canis familiaris ENSCAFG00000007070 I 0.820
ENSBTAG00000046481 Bos taurus ENSBTAG00000046481 I 0.804
ENSBTAG00000016502 Bos taurus ENSBTAG00000016502 I 0.797
ENSAMXG00000004859 Astyanax mexicanus ENSAMXG00000004859 I 0.768
ENSAMEG00000012221 Ailuropoda melanoleuca ENSAMEG00000012221 I 0.820
ZNF740 Equus caballus ENSECAG00000013071 I 0.804
ZNF740 Echinops telfairi ENSETEG00000006127 I 0.820
ENSFALG00000004356 Ficedula albicollis ENSFALG00000004356 I 0.827
ZNF740 Myotis lucifugus ENSMLUG00000017275 I 0.804
ZNF740 Microcebus murinus ENSMICG00000014191 I 0.788
ENSMEUG00000003745 Macropus eugenii ENSMEUG00000003745 I 0.816
ZNF740 Loxodonta africana ENSLAFG00000009191 I 0.820
ZNF740 Gorilla gorilla ENSGGOG00000006790 I 0.804
ENSGALG00000026752 Gallus gallus ENSGALG00000026752 I 0.816
ZNF740 Felis catus ENSFCAG00000005868 I 0.820
ZNF740 Anolis carolinensis ENSACAG00000006993 I 0.820
ENSPFOG00000001571 Poecilia formosa ENSPFOG00000001571 N 0.758
znf740b Tetraodon nigroviridis ENSTNIG00000015044 N 0.758
znf740b Takifugu rubripes ENSTRUG00000001712 N 0.758
ENSONIG00000012259 Oreochromis niloticus ENSONIG00000012259 N 0.758
znf740b Gasterosteus aculeatus ENSGACG00000009456 N 0.758
ENSXMAG00000008098 Xiphophorus maculatus ENSXMAG00000008098 N 0.758
znf740b Oryzias latipes ENSORLG00000008031 N 0.758