Gfo_R004393 (Geospiza fortis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Gfo_R004393 T135707_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Zfp740
M00784_2.00
Mus musculus
MCCCCCCNHN

NDNGGGGGGK
PBM
Weirauch et al.(2013)
pTH2857
0.820 0.926
Zfp740
M00143_2.00
Mus musculus
HMCCCCCNNN

NNNGGGGGKD
PBM
Badis et al.(2009)
Zfp740_0925
0.820 0.926
Zfp740
M02935_2.00
Mus musculus
NCCCCCCCAH

DTGGGGGGGN
SELEX
Jolma et al.(2013)
Zfp740_1
0.820 0.926
ZNF740
M02891_2.00
Homo sapiens
VCCCCCCCMY

RKGGGGGGGB
SELEX
Jolma et al.(2013)
ZNF740_1
0.804 0.926
ZNF740
M02892_2.00
Homo sapiens
VCCCCCCCAY

RTGGGGGGGB
SELEX
Jolma et al.(2013)
ZNF740_2
0.804 0.926
ZNF740
M04467_2.00
Homo sapiens
NYVCCCCCCCCAC

GTGGGGGGGGBRN
SELEX
Yin et al.(2017)
ZNF740_eDBD_HT-SELEX
0.804 0.926
ZNF740
M04469_2.00
Homo sapiens
NYNCCCCCCCCAC

GTGGGGGGGGNRN
SELEX
Yin et al.(2017)
ZNF740_FL_HT-SELEX
0.804 0.926
ZNF740
M10221_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$ZNF740_02
0.804 0.926
ZNF740
M04468_2.00
Homo sapiens
YYDCCCCCCCCAY

RTGGGGGGGGHRR
SELEX
Yin et al.(2017)
ZNF740_eDBD_Methyl-HT-SELEX
0.804 0.926
ZNF740
M04470_2.00
Homo sapiens
NYVCCCCCCCCAC

GTGGGGGGGGBRN
SELEX
Yin et al.(2017)
ZNF740_FL_Methyl-HT-SELEX
0.804 0.926
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gfo_R004393 C2H2 ZF 16 38
Gfo_R004393 C2H2 ZF 44 66
Gfo_R004393 C2H2 ZF 72 93

Links

Other C2H2 ZF family TFs
Other Geospiza fortis TFs

56 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Alligator_sinensis_CCG005405.1 Alligator sinensis Alligator_sinensis_CCG005405.1 I 0.820
Cmyd_10004697 Chelonia mydas Cmyd_10004697 I 0.820
ENSAMEG00000012221 Ailuropoda melanoleuca ENSAMEG00000012221 I 0.820
ENSAMXG00000004859 Astyanax mexicanus ENSAMXG00000004859 I 0.768
ENSBTAG00000016502 Bos taurus ENSBTAG00000016502 I 0.797
ENSBTAG00000046481 Bos taurus ENSBTAG00000046481 I 0.804
ENSBTAP00000021935-D1 Bos grunniens ENSBTAP00000021935-D1 I 0.804
ENSBTAP00000048192-D3 Bos grunniens ENSBTAP00000048192-D3 I 0.804
ENSCPOG00000014815 Cavia porcellus ENSCPOG00000014815 I 0.820
ENSCSAG00000005533 Chlorocebus sabaeus ENSCSAG00000005533 I 0.781
ENSDORG00000002972 Dipodomys ordii ENSDORG00000002972 I 0.820
ENSFALG00000004356 Ficedula albicollis ENSFALG00000004356 I 0.827
ENSGALG00000026752 Gallus gallus ENSGALG00000026752 I 0.816
ENSMEUG00000003745 Macropus eugenii ENSMEUG00000003745 I 0.816
ENSMMUP00000006945 Macaca fascicularis ENSMMUP00000006945 I 0.804
ENSNLEG00000017717 Nomascus leucogenys ENSNLEG00000017717 I 0.804
ENSONIG00000012259 Oreochromis niloticus ENSONIG00000012259 N 0.758
ENSPANG00000018242 Papio anubis ENSPANG00000018242 I 0.804
ENSPFOG00000001571 Poecilia formosa ENSPFOG00000001571 N 0.758
ENSPFOG00000001757 Poecilia formosa ENSPFOG00000001757 I 0.765
ENSPPYG00000004570 Pongo abelii ENSPPYG00000004570 I 0.804
ENSPSIG00000003019 Pelodiscus sinensis ENSPSIG00000003019 I 0.820
ENSSHAG00000000623 Sarcophilus harrisii ENSSHAG00000000623 I 0.816
ENSSSCG00000000256 Sus scrofa ENSSSCG00000000256 I 0.804
ENSSTOG00000011188 Ictidomys tridecemlineatus ENSSTOG00000011188 I 0.820
ENSTSYG00000010942 Tarsius syrichta ENSTSYG00000010942 I 0.804
ENSXMAG00000008098 Xiphophorus maculatus ENSXMAG00000008098 N 0.758
Myotis_brandtii_ZNF740_10023006 Myotis brandtii Myotis_brandtii_ZNF740_10023006 I 0.804
Zfp740 Mus musculus ENSMUSG00000046897 D 0.820
ZNF740 Microcebus murinus ENSMICG00000014191 I 0.788
znf740 Xenopus tropicalis XB-GENE-1219010 I 0.804
ZNF740 Equus caballus ENSECAG00000013071 I 0.804
ZNF740 Tupaia belangeri ENSTBEG00000015437 I 0.820
ZNF740 Callithrix jacchus ENSCJAG00000018381 I 0.804
ZNF740 Tursiops truncatus ENSTTRG00000002776 I 0.804
ZNF740 Canis familiaris ENSCAFG00000007070 I 0.820
ZNF740 Dasypus novemcinctus ENSDNOG00000033888 I 0.820
ZNF740 Sorex araneus ENSSARG00000012946 I 0.804
Znf740 Rattus norvegicus ENSRNOG00000012192 I 0.820
ZNF740 Oryctolagus cuniculus ENSOCUG00000001422 I 0.804
ZNF740 Loxodonta africana ENSLAFG00000009191 I 0.820
ZNF740 Homo sapiens ENSG00000139651 D 0.804
ZNF740 Felis catus ENSFCAG00000005868 I 0.820
ZNF740 Macaca mulatta ENSMMUG00000005246 I 0.804
ZNF740 Myotis lucifugus ENSMLUG00000017275 I 0.804
ZNF740 Anolis carolinensis ENSACAG00000006993 I 0.820
ZNF740 Echinops telfairi ENSETEG00000006127 I 0.820
ZNF740 Otolemur garnettii ENSOGAG00000025330 I 0.804
ZNF740 Pan troglodytes ENSPTRG00000005005 I 0.804
ZNF740 Gorilla gorilla ENSGGOG00000006790 I 0.804
znf740.S Xenopus laevis XB-GENE-1219015 I 0.804
znf740b Danio rerio ENSDARG00000061174 I 0.771
znf740b Gasterosteus aculeatus ENSGACG00000009456 N 0.758
znf740b Takifugu rubripes ENSTRUG00000001712 N 0.758
znf740b Tetraodon nigroviridis ENSTNIG00000015044 N 0.758
znf740b Oryzias latipes ENSORLG00000008031 N 0.758