Gfo_R004424 (Geospiza fortis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Gfo_R004424 T135708_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
BCL6
M00228_2.00
Homo sapiens
NNVNDVRANN

NNTYBHNBNN
PBM
Barrera et al.(2016)
BCL6_REF
0.821 0.986
BCL6
M04424_2.00
Homo sapiens
NYGCTTTCKAGGAAHN

NDTTCCTMGAAAGCRN
SELEX
Yin et al.(2017)
BCL6_eDBD_HT-SELEX_1
0.821 0.986
BCL6
M04425_2.00
Homo sapiens
NDTTCCTMGAWWRCVN

NBGYWWTCKAGGAAHN
SELEX
Yin et al.(2017)
BCL6_eDBD_HT-SELEX_2
0.821 0.986
Bcl6
M08097_2.00
Mus musculus
NDCYYTCYAGGAAN

NTTCCTRGARRGHN
ChIP-seq
Mathelier et al.(2014)
MA0463.1
0.821 0.986
Bcl6
M08024_2.00
Mus musculus
HYNBHHWBWSHTCHYNYYYYYYNBYYHYYH

DRRDRRVNRRRRRRNRDGADSWVWDDVNRD
ChIP-seq
Chen et al.(2011)
SRP001843_Bcl6_IgG_LPSstim
0.821 0.986
BCL6
M08877_2.00
Homo sapiens
NNMYYTCYAGGAA

TTCCTRGARRKNN
Misc
Kulakovskiy et al.(2013)
BCL6_HUMAN.H11MO.0.A
0.821 0.986
Bcl6
M08972_2.00
Mus musculus
NNMTYTCYAGGAA

TTCCTRGARAKNN
Misc
Kulakovskiy et al.(2013)
BCL6_MOUSE.H11MO.0.A
0.821 0.986
Bcl6
M09513_2.00
Mus musculus
NNNNYTTCYWGGAAN

NTTCCWRGAARNNNN
Misc
Heinz et al.(2010)
Liver-Bcl6_GSE31578
0.821 0.986
BCL6
M10180_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$BCL6_01
0.821 0.986
BCL6
M10181_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$BCL6_02
0.821 0.986
BCL6
M10182_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$BCL6_Q3_01
0.821 0.986
BCL6
M10183_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$BCL6_Q3
0.821 0.986
BCL6
M10184_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$BCL6_Q6
0.821 0.986
BCL6
M04426_2.00
Homo sapiens
NTGCTTTCTAGGAAHN

NDTTCCTAGAAAGCAN
SELEX
Yin et al.(2017)
BCL6_eDBD_Methyl-HT-SELEX_1
0.821 0.986
BCL6
M04427_2.00
Homo sapiens
NDTTCCTMGAWWRCVN

NBGYWWTCKAGGAAHN
SELEX
Yin et al.(2017)
BCL6_eDBD_Methyl-HT-SELEX_2
0.821 0.986
BCL6
M00227_2.00
Homo sapiens
NTAATTRWNN

NNWYAATTAN
PBM
Barrera et al.(2016)
BCL6_H676Y
0.814 0.949
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gfo_R004424 C2H2 ZF 521 544
Gfo_R004424 C2H2 ZF 549 571
Gfo_R004424 C2H2 ZF 577 599
Gfo_R004424 C2H2 ZF 605 627
Gfo_R004424 C2H2 ZF 633 655
Gfo_R004424 C2H2 ZF 661 684

Links

Other C2H2 ZF family TFs
Other Geospiza fortis TFs

Invalid Input OrderBy

53 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action