Gfo_R004538 (Geospiza fortis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Gfo_R004538 T135710_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
MYNN
M08283_2.00
Homo sapiens
GRCTYTTAWTTT

AAAWTAARAGYC
ChIP-seq
Schmitges et al.(2016)
Q9NPC7_1-4.RCADE
0.817 0.973
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gfo_R004538 C2H2 ZF 308 329
Gfo_R004538 C2H2 ZF 335 357
Gfo_R004538 C2H2 ZF 363 386
Gfo_R004538 C2H2 ZF 392 414
Gfo_R004538 C2H2 ZF 420 442
Gfo_R004538 C2H2 ZF 448 470
Gfo_R004538 C2H2 ZF 476 498
Gfo_R004538 C2H2 ZF 504 527

Links

Other C2H2 ZF family TFs
Other Geospiza fortis TFs

46 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Aan_R012711 Calypte anna Aan_R012711 I 0.827
Afo_R003947 Aptenodytes forsteri Afo_R003947 I 0.827
Alligator_sinensis_CCG019192.1 Alligator sinensis Alligator_sinensis_CCG019192.1 I 0.823
MYNN Anolis carolinensis ENSACAG00000015699 I 0.814
ENSAMEG00000002034 Ailuropoda melanoleuca ENSAMEG00000002034 I 0.817
ENSAPLG00000007481 Anas platyrhynchos ENSAPLG00000007481 I 0.826
MYNN Canis familiaris ENSCAFG00000014700 I 0.817
MYNN Callithrix jacchus ENSCJAG00000002629 I 0.817
MYNN Cavia porcellus ENSCPOG00000011640 I 0.817
ENSCSAG00000012570 Chlorocebus sabaeus ENSCSAG00000012570 I 0.817
MYNN Dasypus novemcinctus ENSDNOG00000004681 I 0.817
MYNN Equus caballus ENSECAG00000016427 I 0.817
ENSFALG00000008628 Ficedula albicollis ENSFALG00000008628 I 0.827
MYNN Felis catus ENSFCAG00000000505 I 0.817
MYNN Homo sapiens ENSG00000085274 D 0.817
MYNN Gallus gallus ENSGALG00000009409 I 0.824
MYNN Gorilla gorilla ENSGGOG00000022638 I 0.817
ENSLOCG00000007120 Lepisosteus oculatus ENSLOCG00000007120 I 0.777
MYNN Meleagris gallopavo ENSMGAG00000010294 I 0.824
MYNN Macaca mulatta ENSMMUG00000021875 I 0.817
ENSMMUP00000038685 Macaca fascicularis ENSMMUP00000038685 I 0.817
MYNN Monodelphis domestica ENSMODG00000016120 I 0.812
ENSMPUG00000017089 Mustela putorius furo ENSMPUG00000017089 I 0.817
Mynn Mus musculus ENSMUSG00000037730 I 0.817
ENSNLEG00000005059 Nomascus leucogenys ENSNLEG00000005059 I 0.817
MYNN Ornithorhynchus anatinus ENSOANG00000010325 I 0.824
ENSOARG00000000757 Ovis aries ENSOARG00000000757 I 0.817
MYNN Oryctolagus cuniculus ENSOCUG00000003252 I 0.817
MYNN Otolemur garnettii ENSOGAG00000004734 I 0.823
ENSP00000326240-D1 Bos grunniens ENSP00000326240-D1 I 0.817
ENSPANG00000026081 Papio anubis ENSPANG00000026081 I 0.817
MYNN Procavia capensis ENSPCAG00000015202 I 0.817
ENSPPYG00000014280 Pongo abelii ENSPPYG00000014280 I 0.817
ENSPSIG00000004647 Pelodiscus sinensis ENSPSIG00000004647 I 0.824
MYNN Pan troglodytes ENSPTRG00000015605 I 0.817
Mynn Rattus norvegicus ENSRNOG00000027923 I 0.817
ENSSHAG00000016096 Sarcophilus harrisii ENSSHAG00000016096 I 0.812
MYNN Sus scrofa ENSSSCG00000026829 I 0.817
ENSSTOG00000004642 Ictidomys tridecemlineatus ENSSTOG00000004642 I 0.815
MYNN Tupaia belangeri ENSTBEG00000007630 I 0.808
MYNN Taeniopygia guttata ENSTGUG00000010998 I 0.827
MYNN Vicugna pacos ENSVPAG00000007981 I 0.817
Myotis_brandtii_MYNN_10024775 Myotis brandtii Myotis_brandtii_MYNN_10024775 I 0.817
Pvit_09122 Pogona vitticeps Pvit_09122 I 0.776
mynn.L Xenopus laevis XB-GENE-941014 I 0.797
XP_002931590 Xenopus tropicalis XP_002931590 I 0.797