CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Gfo_R006806
(
Geospiza fortis
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
Gfo_R006806
T135749_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Zbtb1
M00775_2.00
Mus musculus
NHMMCGCRHN
NDYGCGKKDN
PBM
Weirauch et al.(2013)
pTH2366
0.821
0.965
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Gfo_R006806
C2H2 ZF
532
553
FRCPNCGQRFDTENLVVEHMSN
Gfo_R006806
C2H2 ZF
572
598
HRRKHFCNLCGKGFYQRCHLREHYTVH
Gfo_R006806
C2H2 ZF
604
626
FVCQTCGKQFLRERQLRLHNDMH
Gfo_R006806
C2H2 ZF
660
682
TICQVCFQIFPNNEQLEQHRDVH
Gfo_R006806
C2H2 ZF
684
707
YTCGVCGAKFNLRKDMRSHYNAKH
Links
Other
C2H2 ZF
family TFs
Other
Geospiza fortis
TFs
40 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy