Gfo_R007918 (Geospiza fortis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Gfo_R007918 T135762_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ZBTB6
M08364_2.00
Homo sapiens
SBNGCTCCAKVDYCN

NGRHBMTGGAGCNVS
ChIP-seq
Schmitges et al.(2016)
Q15916.MEME
0.807 0.967
ZBTB6
M08940_2.00
Homo sapiens
NRGCTCCAKCDYC

GRHGMTGGAGCYN
Misc
Kulakovskiy et al.(2013)
ZBTB6_HUMAN.H11MO.0.C
0.807 0.967
ZBTB6
M10307_2.00
Homo sapiens
BGGCTCYAKSRYC

GRYSMTRGAGCCV
Transfac
Matys et al.(2006)
V$ZID_01
0.807 0.967
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gfo_R007918 C2H2 ZF 308 330
Gfo_R007918 C2H2 ZF 333 355
Gfo_R007918 C2H2 ZF 361 383
Gfo_R007918 C2H2 ZF 389 412

Links

Other C2H2 ZF family TFs
Other Geospiza fortis TFs

Invalid Input OrderBy

49 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action