CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Gfo_R007994
(
Geospiza fortis
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
Gfo_R007994
T135763_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Gfi1b
M08098_2.00
Mus musculus
MAATCWCWGCH
DGCWGWGATTK
ChIP-seq
Mathelier et al.(2014)
MA0483.1
0.812
0.935
Gfi1b
M08977_2.00
Mus musculus
MAAYCACWGH
DCWGWGRTTK
Misc
Kulakovskiy et al.(2013)
GFI1B_MOUSE.H11MO.0.A
0.812
0.935
Gfi1b
M09514_2.00
Mus musculus
MAATCWSWGC
GCWSWGATTK
Misc
Heinz et al.(2010)
HPC7-Gfi1b_GSE22178
0.812
0.935
GFI1B
M00240_2.00
Homo sapiens
NNAAATCWSDN
NHSWGATTTNN
PBM
Barrera et al.(2016)
GFI1B_REF
0.810
0.928
GFI1B
M04523_2.00
Homo sapiens
NMAATCASDGCNNBBCACTNN
NNAGTGVVNNGCHSTGATTKN
SELEX
Yin et al.(2017)
GFI1B_eDBD_HT-SELEX
0.810
0.928
GFI1B
M08909_2.00
Homo sapiens
MAATCWSDGY
RCHSWGATTK
Misc
Kulakovskiy et al.(2013)
GFI1B_HUMAN.H11MO.0.A
0.810
0.928
GFI1B
M10243_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GFI1B_01
0.810
0.928
GFI1B
M10244_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GFI1B_Q6
0.810
0.928
GFI1B
M04524_2.00
Homo sapiens
NMAATCASWGCDNNBCACTHN
NDAGTGVNNHGCWSTGATTKN
SELEX
Yin et al.(2017)
GFI1B_eDBD_Methyl-HT-SELEX
0.810
0.928
GFI1B
M00239_2.00
Homo sapiens
NNAAATCWSDN
NHSWGATTTNN
PBM
Barrera et al.(2016)
GFI1B_A204T
0.800
0.920
sens-2
M06165_2.00
Drosophila melanogaster
RYAAATCWSDGCAYNC
GNRTGCHSWGATTTRY
B1H
Zhu et al.(2011)
sens-2_SANGER_2.5_FBgn0051632
0.787
0.848
GFI1
M00238_2.00
Homo sapiens
NWAWMNNNN
NNNNKWTWN
PBM
Barrera et al.(2016)
GFI1_REF
0.786
0.891
GFI1
M04507_2.00
Homo sapiens
BMAATCACDGCNHBBCACTMN
NKAGTGVVDNGCHGTGATTKV
SELEX
Yin et al.(2017)
GFI1_eDBD_HT-SELEX
0.786
0.891
Gfi1
M02668_2.00
Rattus norvegicus
NMAATCWVHS
SDBWGATTKN
SELEX
Mathelier et al.(2014)
MA0038.1
0.786
0.891
GFI1
M08905_2.00
Homo sapiens
MAATCWSWGY
RCWSWGATTK
Misc
Kulakovskiy et al.(2013)
GFI1_HUMAN.H11MO.0.C
0.786
0.891
Gfi1
M08984_2.00
Mus musculus
MAATCWSWGY
RCWSWGATTK
Misc
Kulakovskiy et al.(2013)
GFI1_MOUSE.H11MO.0.C
0.786
0.891
GFI1
M10235_2.00
Homo sapiens
NNNNNNNRCHSWGATTTDNNBNNN
NNNVNNHAAATCWSDGYNNNNNNN
Transfac
Matys et al.(2006)
V$GFI1_01
0.786
0.891
GFI1
M10236_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GFI1_Q6_01
0.786
0.891
GFI1
M04508_2.00
Homo sapiens
NNAGTGVVNHGCWSTGATTKV
BMAATCASWGCDNBBCACTNN
SELEX
Yin et al.(2017)
GFI1_eDBD_Methyl-HT-SELEX
0.786
0.891
GFI1
M00236_2.00
Homo sapiens
NAATMNNNN
NNNNKATTN
PBM
Barrera et al.(2016)
GFI1_L400F
0.784
0.884
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Gfo_R007994
C2H2 ZF
168
191
FHCVKCNKVFSTPHGLEVHVRRSH
Gfo_R007994
C2H2 ZF
197
219
FACEVCGKTFGHAVSLEQHTNIH
Gfo_R007994
C2H2 ZF
225
247
FECKMCGKTFKRSSTLSTHLLIH
Gfo_R007994
C2H2 ZF
253
275
YPCQYCGKRFHQKSDMKKHTYIH
Gfo_R007994
C2H2 ZF
281
303
HKCQVCGKAFSQSSNLITHSRKH
Gfo_R007994
C2H2 ZF
309
332
FSCELCAKGFQRKVDLRRHRETQH
Links
Other
C2H2 ZF
family TFs
Other
Geospiza fortis
TFs
137 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy