Gfo_R008167 (Geospiza fortis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Gfo_R008167 T135767_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
BCL11A
M07926_2.00
Homo sapiens
BTYTCASTTCCYYHH

DDRRGGAASTGARAV
ChIP-seq
Gerstein et al.(2012)
GM12878_BCL11A_HudsonAlpha
0.827 1.000
BCL11A
M08881_2.00
Homo sapiens
BHBYCABTTCCYBHNYN

NRNDVRGGAAVTGRVDV
Misc
Kulakovskiy et al.(2013)
BC11A_HUMAN.H11MO.0.A
0.827 1.000
BCL11A
M10187_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$BCL11A_02
0.827 1.000
BCL11B
M04453_2.00
Homo sapiens
GTGAACGBNDNNVCTACAC

GTGTAGBNNHNVCGTTCAC
SELEX
Yin et al.(2017)
BCL11B_eDBD_HT-SELEX
0.806 0.947
BCL11B
M04454_2.00
Homo sapiens
GTGAACGBNDNHVCTACAC

GTGTAGBDNHNVCGTTCAC
SELEX
Yin et al.(2017)
BCL11B_eDBD_Methyl-HT-SELEX
0.806 0.947
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gfo_R008167 C2H2 ZF 414 435
Gfo_R008167 C2H2 ZF 441 463
Gfo_R008167 C2H2 ZF 668 690
Gfo_R008167 C2H2 ZF 696 718
Gfo_R008167 C2H2 ZF 726 749

Links

Other C2H2 ZF family TFs
Other Geospiza fortis TFs

125 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Aan_R000616 Calypte anna Aan_R000616 I 0.806
Aan_R006276 Calypte anna Aan_R006276 I 0.827
Afo_R004626 Aptenodytes forsteri Afo_R004626 I 0.806
Afo_R011357 Aptenodytes forsteri Afo_R011357 I 0.827
Alligator_sinensis_CCG008166.1 Alligator sinensis Alligator_sinensis_CCG008166.1 I 0.827
BCL11A Taeniopygia guttata ENSTGUG00000006790 I 0.827
BCL11A Sus scrofa ENSSSCG00000008392 I 0.827
BCL11A Homo sapiens ENSG00000119866 D 0.827
BCL11A Oryctolagus cuniculus ENSOCUG00000023948 I 0.827
BCL11A Felis catus ENSFCAG00000027154 I 0.827
BCL11A Erinaceus europaeus ENSEEUG00000010958 I 0.827
BCL11A Gorilla gorilla ENSGGOG00000007337 I 0.827
Bcl11a Rattus norvegicus ENSRNOG00000007049 I 0.827
BCL11A Loxodonta africana ENSLAFG00000003101 I 0.827
BCL11A Pteropus vampyrus ENSPVAG00000000042 I 0.827
BCL11A Meleagris gallopavo ENSMGAG00000013042 I 0.827
BCL11A Microcebus murinus ENSMICG00000015052 I 0.827
Bcl11a Mus musculus ENSMUSG00000000861 I 0.827
BCL11A Ornithorhynchus anatinus ENSOANG00000012402 I 0.825
Bcl11a Dipodomys ordii ENSDORG00000010064 I 0.827
BCL11A Dasypus novemcinctus ENSDNOG00000019842 I 0.827
BCL11A Anolis carolinensis ENSACAG00000015159 I 0.827
bcl11a Xenopus tropicalis XB-GENE-486641 I 0.827
BCL11A Tursiops truncatus ENSTTRG00000006191 I 0.827
BCL11A Cavia porcellus ENSCPOG00000007587 I 0.827
BCL11A Callithrix jacchus ENSCJAG00000009226 I 0.827
BCL11A Vicugna pacos ENSVPAG00000000491 I 0.827
bcl11aa Gasterosteus aculeatus ENSGACG00000013419 I 0.804
bcl11aa Danio rerio ENSDARG00000061352 I 0.815
bcl11aa Oryzias latipes ENSORLG00000001704 I 0.803
bcl11aa Takifugu rubripes ENSTRUG00000003815 I 0.803
bcl11ab Oryzias latipes ENSORLG00000013169 I 0.815
bcl11ab Gasterosteus aculeatus ENSGACG00000019222 I 0.817
bcl11ab Tetraodon nigroviridis ENSTNIG00000012076 I 0.815
bcl11ab Danio rerio ENSDARG00000063153 I 0.815
bcl11ab Takifugu rubripes ENSTRUG00000013751 I 0.815
BCL11B Otolemur garnettii ENSOGAG00000033204 I 0.806
BCL11B Macaca mulatta ENSMMUG00000003261 I 0.806
BCL11B Pan troglodytes ENSPTRG00000006707 I 0.806
BCL11B Monodelphis domestica ENSMODG00000012964 I 0.806
BCL11B Ornithorhynchus anatinus ENSOANG00000014770 I 0.806
BCL11B Bos taurus ENSBTAG00000018019 I 0.806
BCL11B Canis familiaris ENSCAFG00000017809 I 0.806
BCL11B Pteropus vampyrus ENSPVAG00000015516 I 0.806
BCL11B Dasypus novemcinctus ENSDNOG00000012677 I 0.806
BCL11B Homo sapiens ENSG00000127152 D 0.806
BCL11B Tursiops truncatus ENSTTRG00000012140 I 0.800
Bcl11b Mus musculus ENSMUSG00000048251 I 0.806
BCL11B Taeniopygia guttata ENSTGUG00000012711 I 0.806
BCL11B Gorilla gorilla ENSGGOG00000001232 I 0.806
BCL11B Sus scrofa ENSSSCG00000002507 I 0.806
BCL11B Callithrix jacchus ENSCJAG00000006713 I 0.806
BCL11B Loxodonta africana ENSLAFG00000009254 I 0.806
Bcl11b Rattus norvegicus ENSRNOG00000005776 I 0.806
bcl11ba Takifugu rubripes ENSTRUG00000003531 I 0.811
bcl11ba Oryzias latipes ENSORLG00000010826 I 0.811
bcl11ba Tetraodon nigroviridis ENSTNIG00000008283 I 0.811
bcl11ba Gasterosteus aculeatus ENSGACG00000013118 I 0.814
BGLB012676 Biomphalaria glabrata BGLB012676 I 0.769
Cmyd_10008592 Chelonia mydas Cmyd_10008592 I 0.825
Cmyd_10012109 Chelonia mydas Cmyd_10012109 I 0.806
ENSACAG00000013085 Anolis carolinensis ENSACAG00000013085 I 0.806
ENSAMEG00000015813 Ailuropoda melanoleuca ENSAMEG00000015813 I 0.827
ENSAMXG00000004597 Astyanax mexicanus ENSAMXG00000004597 I 0.808
ENSAMXG00000015839 Astyanax mexicanus ENSAMXG00000015839 I 0.806
ENSAMXG00000018130 Astyanax mexicanus ENSAMXG00000018130 I 0.804
ENSAPLG00000006283 Anas platyrhynchos ENSAPLG00000006283 I 0.806
ENSAPLG00000007735 Anas platyrhynchos ENSAPLG00000007735 I 0.827
ENSBTAP00000023987-D2 Bos grunniens ENSBTAP00000023987-D2 I 0.827
ENSCPOG00000009946 Cavia porcellus ENSCPOG00000009946 I 0.806
ENSCSAG00000010477 Chlorocebus sabaeus ENSCSAG00000010477 I 0.806
ENSFALG00000011123 Ficedula albicollis ENSFALG00000011123 I 0.827
ENSGALG00000007866 Gallus gallus ENSGALG00000007866 I 0.827
ENSGALG00000011127 Gallus gallus ENSGALG00000011127 I 0.806
ENSGALG00000028278 Gallus gallus ENSGALG00000028278 I 0.806
ENSGMOG00000012414 Gadus morhua ENSGMOG00000012414 I 0.814
ENSGMOG00000015842 Gadus morhua ENSGMOG00000015842 I 0.815
ENSLACG00000003560 Latimeria chalumnae ENSLACG00000003560 I 0.825
ENSLOCG00000008679 Lepisosteus oculatus ENSLOCG00000008679 I 0.811
ENSLOCG00000016135 Lepisosteus oculatus ENSLOCG00000016135 I 0.817
ENSMEUG00000001829 Macropus eugenii ENSMEUG00000001829 I 0.827
ENSMMUG00000011303 Macaca mulatta ENSMMUG00000011303 I 0.827
ENSNLEG00000000711 Nomascus leucogenys ENSNLEG00000000711 I 0.806
ENSOCUG00000024296 Oryctolagus cuniculus ENSOCUG00000024296 I 0.801
ENSONIG00000001067 Oreochromis niloticus ENSONIG00000001067 I 0.801
ENSONIG00000002906 Oreochromis niloticus ENSONIG00000002906 I 0.803
ENSONIG00000011060 Oreochromis niloticus ENSONIG00000011060 I 0.811
ENSONIG00000018855 Oreochromis niloticus ENSONIG00000018855 I 0.815
ENSP00000338774 Macaca fascicularis ENSP00000338774 I 0.827
ENSP00000349723 Macaca fascicularis ENSP00000349723 I 0.802
ENSPANG00000004313 Papio anubis ENSPANG00000004313 I 0.806
ENSPFOG00000003609 Poecilia formosa ENSPFOG00000003609 I 0.804
ENSPFOG00000007224 Poecilia formosa ENSPFOG00000007224 I 0.814
ENSPFOG00000007302 Poecilia formosa ENSPFOG00000007302 I 0.815
ENSPFOG00000019062 Poecilia formosa ENSPFOG00000019062 I 0.803
ENSPPYG00000006131 Pongo abelii ENSPPYG00000006131 I 0.806
ENSPSIG00000013079 Pelodiscus sinensis ENSPSIG00000013079 I 0.806
ENSPSIG00000013644 Pelodiscus sinensis ENSPSIG00000013644 I 0.827
ENSSHAG00000009291 Sarcophilus harrisii ENSSHAG00000009291 I 0.806
ENSSHAG00000015804 Sarcophilus harrisii ENSSHAG00000015804 I 0.827
ENSSTOG00000004523 Ictidomys tridecemlineatus ENSSTOG00000004523 I 0.827
ENSSTOG00000021531 Ictidomys tridecemlineatus ENSSTOG00000021531 I 0.806
ENSTSYG00000009153 Tarsius syrichta ENSTSYG00000009153 I 0.827
ENSXMAG00000007242 Xiphophorus maculatus ENSXMAG00000007242 I 0.806
ENSXMAG00000019910 Xiphophorus maculatus ENSXMAG00000019910 I 0.804
ENSXMAG00000020344 Xiphophorus maculatus ENSXMAG00000020344 I 0.814
fgenesh2_pg.scaffold_136000067 Branchiostoma floridae fgenesh2_pg.scaffold_136000067 I 0.774
Gfo_R006733 Geospiza fortis Gfo_R006733 I 0.806
HHAL008065-PA Halyomorpha halys HHAL008065-PA I 0.762
im:7142702 Oryzias latipes ENSORLG00000010488 I 0.806
im:7142702 Takifugu rubripes ENSTRUG00000018074 I 0.801
im:7142702 Tetraodon nigroviridis ENSTNIG00000009693 I 0.789
im:7142702 Gasterosteus aculeatus ENSGACG00000005537 I 0.804
im:7142702 Danio rerio ENSDARG00000067727 I 0.804
ISCW016418 Ixodes scapularis ISCW016418 I 0.773
L798_02171 Zootermopsis nevadensis L798_02171 I 0.756
LotgiG139415 Lottia gigantea LotgiG139415 I 0.760
Ocbimv22018271m.g Octopus bimaculoides Ocbimv22018271m.g I 0.783
PHUM606430 Pediculus humanus PHUM606430 I 0.765
Pvit_09536 Pogona vitticeps Pvit_09536 I 0.806
Pvit_18645 Pogona vitticeps Pvit_18645 I 0.827
RPRC001562 Rhodnius prolixus RPRC001562 I 0.761
Sakowv30026316m.g Saccoglossus kowalevskii Sakowv30026316m.g I 0.803
SMAR003355 Strigamia maritima SMAR003355 I 0.785
SPU_018909 Strongylocentrotus purpuratus SPU_018909 I 0.821