CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Gfo_R009744
(
Geospiza fortis
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
Gfo_R009744
T135805_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PRDM16
M10223_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PRDM16_03
0.825
0.987
PRDM16
M10224_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PRDM16_04
0.825
0.987
PRDM16
M10225_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PRDM16_05
0.825
0.987
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Gfo_R009744
C2H2 ZF
7
28
FRCEDCDELFQSKLDLRRHKKY
Gfo_R009744
C2H2 ZF
55
77
YECKDCERMFPNKYSLEQHMVIH
Gfo_R009744
C2H2 ZF
83
105
YKCDQCPKAFNWKSNLIRHQMSH
Gfo_R009744
C2H2 ZF
111
134
FECENCVKVFTDPSNLQRHIRSQH
Gfo_R009744
C2H2 ZF
140
162
HACPDCGKTFATSSGLKQHKHIH
Gfo_R009744
C2H2 ZF
168
190
FICEVCHKSYTQFSNLCRHKRMH
Gfo_R009744
C2H2 ZF
197
218
IKCKDCGQMFSTTSSLNKHRRF
Gfo_R009744
C2H2 ZF
738
760
YTCRYCGKIFPRSANLTRHLRTH
Gfo_R009744
C2H2 ZF
766
789
YRCKYCDRSFSISSNLQRHVRNIH
Gfo_R009744
C2H2 ZF
795
817
FKCHLCNRCFGQQTNLDRHLKKH
Links
Other
C2H2 ZF
family TFs
Other
Geospiza fortis
TFs
34 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy