CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
Gfo_R009744
(
Geospiza fortis
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
Gfo_R009744
T135805_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PRDM16
M10223_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PRDM16_03
0.825
0.987
PRDM16
M10224_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PRDM16_04
0.825
0.987
PRDM16
M10225_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PRDM16_05
0.825
0.987
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Gfo_R009744
C2H2 ZF
7
28
FRCEDCDELFQSKLDLRRHKKY
Gfo_R009744
C2H2 ZF
55
77
YECKDCERMFPNKYSLEQHMVIH
Gfo_R009744
C2H2 ZF
83
105
YKCDQCPKAFNWKSNLIRHQMSH
Gfo_R009744
C2H2 ZF
111
134
FECENCVKVFTDPSNLQRHIRSQH
Gfo_R009744
C2H2 ZF
140
162
HACPDCGKTFATSSGLKQHKHIH
Gfo_R009744
C2H2 ZF
168
190
FICEVCHKSYTQFSNLCRHKRMH
Gfo_R009744
C2H2 ZF
197
218
IKCKDCGQMFSTTSSLNKHRRF
Gfo_R009744
C2H2 ZF
738
760
YTCRYCGKIFPRSANLTRHLRTH
Gfo_R009744
C2H2 ZF
766
789
YRCKYCDRSFSISSNLQRHVRNIH
Gfo_R009744
C2H2 ZF
795
817
FKCHLCNRCFGQQTNLDRHLKKH
Links
Other
C2H2 ZF
family TFs
Other
Geospiza fortis
TFs
34 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
PRDM16
Homo sapiens
ENSG00000142611
D
0.825
ENSAMXG00000014024
Astyanax mexicanus
ENSAMXG00000014024
I
0.777
si:ch211-263k4.2
Oryzias latipes
ENSORLG00000004492
I
0.774
ENSPFOG00000010341
Poecilia formosa
ENSPFOG00000010341
I
0.774
ENSPPYG00000001968
Pongo abelii
ENSPPYG00000001968
I
0.825
ENSPSIG00000004093
Pelodiscus sinensis
ENSPSIG00000004093
I
0.825
PRDM16
Sus scrofa
ENSSSCG00000021490
I
0.815
ENSXMAG00000019072
Xiphophorus maculatus
ENSXMAG00000019072
I
0.774
Aan_R005955
Calypte anna
Aan_R005955
I
0.805
Afo_R003306
Aptenodytes forsteri
Afo_R003306
I
0.827
Alligator_sinensis_CCG011602.1
Alligator sinensis
Alligator_sinensis_CCG011602.1
I
0.827
Brh_R007819
Buceros rhinoceros
Brh_R007819
I
0.827
ENSP00000270722
Macaca fascicularis
ENSP00000270722
I
0.825
ENSP00000417899-D2
Bos grunniens
ENSP00000417899-D2
I
0.823
Ogr15306
Ophisaurus gracilis
Ogr15306
I
0.802
ENSONIG00000002121
Oreochromis niloticus
ENSONIG00000002121
I
0.770
PRDM16
Otolemur garnettii
ENSOGAG00000005055
I
0.821
PRDM16
Macaca mulatta
ENSMMUG00000009350
I
0.825
ENSAPLG00000005898
Anas platyrhynchos
ENSAPLG00000005898
I
0.827
PRDM16
Bos taurus
ENSBTAG00000018965
I
0.823
PRDM16
Canis familiaris
ENSCAFG00000019473
I
0.818
PRDM16
Danio rerio
ENSDARG00000078324
I
0.779
PRDM16
Equus caballus
ENSECAG00000017045
I
0.821
ENSFALG00000009580
Ficedula albicollis
ENSFALG00000009580
I
0.805
si:ch211-263k4.2
Gasterosteus aculeatus
ENSGACG00000006600
I
0.774
ENSGALG00000001063
Gallus gallus
ENSGALG00000001063
I
0.827
PRDM16
Gorilla gorilla
ENSGGOG00000003763
I
0.825
ENSGMOG00000015664
Gadus morhua
ENSGMOG00000015664
I
0.779
PRDM16
Loxodonta africana
ENSLAFG00000001071
I
0.823
ENSLOCG00000005336
Lepisosteus oculatus
ENSLOCG00000005336
I
0.811
PRDM16
Meleagris gallopavo
ENSMGAG00000001857
I
0.827
XP_002938538
Xenopus tropicalis
XP_002938538
I
0.824
si:ch211-263k4.2
Takifugu rubripes
ENSTRUG00000014772
N
0.756
si:ch211-263k4.2
Tetraodon nigroviridis
ENSTNIG00000011975
N
0.756