Gfo_R009744 (Geospiza fortis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Gfo_R009744 T135805_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PRDM16
M10223_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PRDM16_03
0.825 0.987
PRDM16
M10224_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PRDM16_04
0.825 0.987
PRDM16
M10225_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PRDM16_05
0.825 0.987
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gfo_R009744 C2H2 ZF 7 28
Gfo_R009744 C2H2 ZF 55 77
Gfo_R009744 C2H2 ZF 83 105
Gfo_R009744 C2H2 ZF 111 134
Gfo_R009744 C2H2 ZF 140 162
Gfo_R009744 C2H2 ZF 168 190
Gfo_R009744 C2H2 ZF 197 218
Gfo_R009744 C2H2 ZF 738 760
Gfo_R009744 C2H2 ZF 766 789
Gfo_R009744 C2H2 ZF 795 817

Links

Other C2H2 ZF family TFs
Other Geospiza fortis TFs

34 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
PRDM16 Homo sapiens ENSG00000142611 D 0.825
ENSAMXG00000014024 Astyanax mexicanus ENSAMXG00000014024 I 0.777
si:ch211-263k4.2 Oryzias latipes ENSORLG00000004492 I 0.774
ENSPFOG00000010341 Poecilia formosa ENSPFOG00000010341 I 0.774
ENSPPYG00000001968 Pongo abelii ENSPPYG00000001968 I 0.825
ENSPSIG00000004093 Pelodiscus sinensis ENSPSIG00000004093 I 0.825
PRDM16 Sus scrofa ENSSSCG00000021490 I 0.815
ENSXMAG00000019072 Xiphophorus maculatus ENSXMAG00000019072 I 0.774
Aan_R005955 Calypte anna Aan_R005955 I 0.805
Afo_R003306 Aptenodytes forsteri Afo_R003306 I 0.827
Alligator_sinensis_CCG011602.1 Alligator sinensis Alligator_sinensis_CCG011602.1 I 0.827
Brh_R007819 Buceros rhinoceros Brh_R007819 I 0.827
ENSP00000270722 Macaca fascicularis ENSP00000270722 I 0.825
ENSP00000417899-D2 Bos grunniens ENSP00000417899-D2 I 0.823
Ogr15306 Ophisaurus gracilis Ogr15306 I 0.802
ENSONIG00000002121 Oreochromis niloticus ENSONIG00000002121 I 0.770
PRDM16 Otolemur garnettii ENSOGAG00000005055 I 0.821
PRDM16 Macaca mulatta ENSMMUG00000009350 I 0.825
ENSAPLG00000005898 Anas platyrhynchos ENSAPLG00000005898 I 0.827
PRDM16 Bos taurus ENSBTAG00000018965 I 0.823
PRDM16 Canis familiaris ENSCAFG00000019473 I 0.818
PRDM16 Danio rerio ENSDARG00000078324 I 0.779
PRDM16 Equus caballus ENSECAG00000017045 I 0.821
ENSFALG00000009580 Ficedula albicollis ENSFALG00000009580 I 0.805
si:ch211-263k4.2 Gasterosteus aculeatus ENSGACG00000006600 I 0.774
ENSGALG00000001063 Gallus gallus ENSGALG00000001063 I 0.827
PRDM16 Gorilla gorilla ENSGGOG00000003763 I 0.825
ENSGMOG00000015664 Gadus morhua ENSGMOG00000015664 I 0.779
PRDM16 Loxodonta africana ENSLAFG00000001071 I 0.823
ENSLOCG00000005336 Lepisosteus oculatus ENSLOCG00000005336 I 0.811
PRDM16 Meleagris gallopavo ENSMGAG00000001857 I 0.827
XP_002938538 Xenopus tropicalis XP_002938538 I 0.824
si:ch211-263k4.2 Takifugu rubripes ENSTRUG00000014772 N 0.756
si:ch211-263k4.2 Tetraodon nigroviridis ENSTNIG00000011975 N 0.756