Gfo_R009744 (Geospiza fortis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Gfo_R009744 T135805_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PRDM16
M10223_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PRDM16_03 		0.825 0.987
PRDM16
M10224_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PRDM16_04 		0.825 0.987
PRDM16
M10225_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PRDM16_05 		0.825 0.987
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gfo_R009744 C2H2 ZF 7 28
Gfo_R009744 C2H2 ZF 55 77
Gfo_R009744 C2H2 ZF 83 105
Gfo_R009744 C2H2 ZF 111 134
Gfo_R009744 C2H2 ZF 140 162
Gfo_R009744 C2H2 ZF 168 190
Gfo_R009744 C2H2 ZF 197 218
Gfo_R009744 C2H2 ZF 738 760
Gfo_R009744 C2H2 ZF 766 789
Gfo_R009744 C2H2 ZF 795 817

Links

Other C2H2 ZF family TFs
Other Geospiza fortis TFs

34 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R005955 Calypte anna Aan_R005955 I 0.805
Afo_R003306 Aptenodytes forsteri Afo_R003306 I 0.827
Alligator_sinensis_CCG011602.1 Alligator sinensis Alligator_sinensis_CCG011602.1 I 0.827
Brh_R007819 Buceros rhinoceros Brh_R007819 I 0.827
ENSAMXG00000014024 Astyanax mexicanus ENSAMXG00000014024 I 0.777
ENSAPLG00000005898 Anas platyrhynchos ENSAPLG00000005898 I 0.827
ENSFALG00000009580 Ficedula albicollis ENSFALG00000009580 I 0.805
ENSGALG00000001063 Gallus gallus ENSGALG00000001063 I 0.827
ENSGMOG00000015664 Gadus morhua ENSGMOG00000015664 I 0.779
ENSLOCG00000005336 Lepisosteus oculatus ENSLOCG00000005336 I 0.811
ENSONIG00000002121 Oreochromis niloticus ENSONIG00000002121 I 0.770
ENSP00000270722 Macaca fascicularis ENSP00000270722 I 0.825
ENSP00000417899-D2 Bos grunniens ENSP00000417899-D2 I 0.823
ENSPFOG00000010341 Poecilia formosa ENSPFOG00000010341 I 0.774
ENSPPYG00000001968 Pongo abelii ENSPPYG00000001968 I 0.825
ENSPSIG00000004093 Pelodiscus sinensis ENSPSIG00000004093 I 0.825
ENSXMAG00000019072 Xiphophorus maculatus ENSXMAG00000019072 I 0.774
Ogr15306 Ophisaurus gracilis Ogr15306 I 0.802
PRDM16 Equus caballus ENSECAG00000017045 I 0.821
PRDM16 Danio rerio ENSDARG00000078324 I 0.779
PRDM16 Canis familiaris ENSCAFG00000019473 I 0.818
PRDM16 Bos taurus ENSBTAG00000018965 I 0.823
PRDM16 Gorilla gorilla ENSGGOG00000003763 I 0.825
PRDM16 Otolemur garnettii ENSOGAG00000005055 I 0.821
PRDM16 Loxodonta africana ENSLAFG00000001071 I 0.823
PRDM16 Sus scrofa ENSSSCG00000021490 I 0.815
PRDM16 Homo sapiens ENSG00000142611 D 0.825
PRDM16 Meleagris gallopavo ENSMGAG00000001857 I 0.827
PRDM16 Macaca mulatta ENSMMUG00000009350 I 0.825
si:ch211-263k4.2 Gasterosteus aculeatus ENSGACG00000006600 I 0.774
si:ch211-263k4.2 Tetraodon nigroviridis ENSTNIG00000011975 N 0.756
si:ch211-263k4.2 Oryzias latipes ENSORLG00000004492 I 0.774
si:ch211-263k4.2 Takifugu rubripes ENSTRUG00000014772 N 0.756
XP_002938538 Xenopus tropicalis XP_002938538 I 0.824