Gfo_R009744 (Geospiza fortis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Gfo_R009744 T135805_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PRDM16
M10223_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PRDM16_03
0.825 0.987
PRDM16
M10224_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PRDM16_04
0.825 0.987
PRDM16
M10225_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PRDM16_05
0.825 0.987
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gfo_R009744 C2H2 ZF 7 28
Gfo_R009744 C2H2 ZF 55 77
Gfo_R009744 C2H2 ZF 83 105
Gfo_R009744 C2H2 ZF 111 134
Gfo_R009744 C2H2 ZF 140 162
Gfo_R009744 C2H2 ZF 168 190
Gfo_R009744 C2H2 ZF 197 218
Gfo_R009744 C2H2 ZF 738 760
Gfo_R009744 C2H2 ZF 766 789
Gfo_R009744 C2H2 ZF 795 817

Links

Other C2H2 ZF family TFs
Other Geospiza fortis TFs

34 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
PNEG_01109 Pneumocystis murina PNEG_01109 N 0.000
PredSwiss_ASS2010_2533.1 Pneumocystis carinii PredSwiss_ASS2010_2533.1 N 0.000