CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Gfo_R009744
(
Geospiza fortis
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
Gfo_R009744
T135805_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PRDM16
M10223_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PRDM16_03
0.825
0.987
PRDM16
M10224_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PRDM16_04
0.825
0.987
PRDM16
M10225_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PRDM16_05
0.825
0.987
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Gfo_R009744
C2H2 ZF
7
28
FRCEDCDELFQSKLDLRRHKKY
Gfo_R009744
C2H2 ZF
55
77
YECKDCERMFPNKYSLEQHMVIH
Gfo_R009744
C2H2 ZF
83
105
YKCDQCPKAFNWKSNLIRHQMSH
Gfo_R009744
C2H2 ZF
111
134
FECENCVKVFTDPSNLQRHIRSQH
Gfo_R009744
C2H2 ZF
140
162
HACPDCGKTFATSSGLKQHKHIH
Gfo_R009744
C2H2 ZF
168
190
FICEVCHKSYTQFSNLCRHKRMH
Gfo_R009744
C2H2 ZF
197
218
IKCKDCGQMFSTTSSLNKHRRF
Gfo_R009744
C2H2 ZF
738
760
YTCRYCGKIFPRSANLTRHLRTH
Gfo_R009744
C2H2 ZF
766
789
YRCKYCDRSFSISSNLQRHVRNIH
Gfo_R009744
C2H2 ZF
795
817
FKCHLCNRCFGQQTNLDRHLKKH
Links
Other
C2H2 ZF
family TFs
Other
Geospiza fortis
TFs
34 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
PNEG_01109
Pneumocystis murina
PNEG_01109
N
0.000
PredSwiss_ASS2010_2533.1
Pneumocystis carinii
PredSwiss_ASS2010_2533.1
N
0.000