Gfo_R010882 (Geospiza fortis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Gfo_R010882 T135817_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PATZ1
M08287_2.00
Homo sapiens
CCCCDCCC

GGGHGGGG
ChIP-seq
Schmitges et al.(2016)
Q9HBE1.MEME
0.825 0.993
PATZ1
M08864_2.00
Homo sapiens
NYBCHNBYBCMKYCYCYBCCMY

RKGGVRGRGRMKGVRVNDGVRN
Misc
Kulakovskiy et al.(2013)
PATZ1_HUMAN.H11MO.0.C
0.825 0.993
PATZ1
M10137_2.00
Homo sapiens
NDDCCCCCCCCSH

DSGGGGGGGGHHN
Transfac
Matys et al.(2006)
V$MAZR_01
0.825 0.993
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gfo_R010882 C2H2 ZF 147 169
Gfo_R010882 C2H2 ZF 211 232
Gfo_R010882 C2H2 ZF 238 260
Gfo_R010882 C2H2 ZF 268 291
Gfo_R010882 C2H2 ZF 297 319
Gfo_R010882 C2H2 ZF 351 373

Links

Other C2H2 ZF family TFs
Other Geospiza fortis TFs

36 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Brh_R010628 Buceros rhinoceros Brh_R010628 I 0.827
Aan_R008287 Calypte anna Aan_R008287 I 0.827
ENSPSIG00000016553 Pelodiscus sinensis ENSPSIG00000016553 I 0.827
ENSPSIG00000011562 Pelodiscus sinensis ENSPSIG00000011562 I 0.827
ENSFALG00000007450 Ficedula albicollis ENSFALG00000007450 I 0.827
Afo_R009044 Aptenodytes forsteri Afo_R009044 I 0.827
Tal_R008892 Tyto alba Tal_R008892 I 0.827
Pvit_03702 Pogona vitticeps Pvit_03702 I 0.827
ENSAPLG00000003934 Anas platyrhynchos ENSAPLG00000003934 I 0.827
PATZ1 Pan troglodytes ENSPTRG00000014268 I 0.825
PATZ1 Otolemur garnettii ENSOGAG00000027905 I 0.825
ENSPPYG00000011732 Pongo abelii ENSPPYG00000011732 I 0.825
PATZ1 Pteropus vampyrus ENSPVAG00000001749 I 0.825
ENSSTOG00000020707 Ictidomys tridecemlineatus ENSSTOG00000020707 I 0.825
ENSP00000266269-D1 Bos grunniens ENSP00000266269-D1 I 0.825
Myotis_brandtii_PATZ1_10027570 Myotis brandtii Myotis_brandtii_PATZ1_10027570 I 0.825
PATZ1 Ornithorhynchus anatinus ENSOANG00000014654 I 0.825
PATZ1 Tursiops truncatus ENSTTRG00000010279 I 0.825
ENSP00000266269 Macaca fascicularis ENSP00000266269 I 0.825
Patz1 Mus musculus ENSMUSG00000020453 I 0.825
PATZ1 Gorilla gorilla ENSGGOG00000017171 I 0.825
PATZ1 Canis familiaris ENSCAFG00000013087 I 0.825
PATZ1 Gallus gallus ENSGALG00000006934 I 0.825
PATZ1 Homo sapiens ENSG00000100105 D 0.825
PATZ1 Dasypus novemcinctus ENSDNOG00000003183 I 0.825
ENSNLEG00000004385 Nomascus leucogenys ENSNLEG00000004385 I 0.825
PATZ1 Bos taurus ENSBTAG00000005478 I 0.825
PATZ1 Macaca mulatta ENSMMUG00000013911 I 0.825
ENSAMEG00000007074 Ailuropoda melanoleuca ENSAMEG00000007074 I 0.825
PATZ1 Myotis lucifugus ENSMLUG00000009942 I 0.825
PATZ1 Microcebus murinus ENSMICG00000005430 I 0.825
PATZ1 Meleagris gallopavo ENSMGAG00000008439 I 0.825
PATZ1 Cavia porcellus ENSCPOG00000010787 I 0.825
PATZ1 Loxodonta africana ENSLAFG00000002317 I 0.802
ENSLACG00000016839 Latimeria chalumnae ENSLACG00000016839 I 0.791
ENSMEUG00000016293 Macropus eugenii ENSMEUG00000016293 I 0.787